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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … O’Malley, who leads the JGI’s Sequencing Technologies group. DAP-seq allowed the team to identify the direct …
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Access to Rock Star Scientists
… Mo Kaze, Akshay Paropkari, Vicente Ramirez and Rhondene Wint had summer 2018 internships in Walnut Creek. The … their work delivered during the 5th anniversary celebration of the internship program. Candace Cole, UC Merced JGI … UC Merced JGI Mentor : Susannah Tringe, Microbial Systems Group “Everyone here is very kind and really open to talking …
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Refining the Process of Identifying Algae Biotechnology Candidates
… [subhed -- copy to summary above^ as well ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly simple: place these … bioproducts. At NREL, Luke Dahlin in Michael Guarnieri’s group led the effort to screen 107 algal strains, growing …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… P. psychrophila genes drive resilience when salinity fluctuates. The Science The Arctic microalga … ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, thicker ice with … moved to a lower-salinity environment with how a control group responded when moved to an environment of comparable …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising juniors who participated in internships at the DOE Joint Genome … in GOLD. “Besides these, he curated several small sets of phylogeny, biosample metadata tasks we assigned.”       …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that … rumen microbes gave researchers access to a collection of novel enzymes — many of which contained interesting …
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Four Researchers Join JGI User Executive Committee
… have been elected to the User Executive Committee of the Joint Genome Institute, a Department of Energy user facility located at Lawrence Berkeley National Laboratory. Holly Bik of the … between biology and computer science. Bik and her research group are regular participants of the JGI annual user …
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Open Frameworks Training the Next Generation of Scientists
… technologies provide opportunities for students and professors alike The Science In  PLoS Pathogens , a team of faculty and researchers describe a workforce development program for higher education that … for sequencing and analysis at the JGI to help produce novel fungal genomes. They manually curate data to connect …
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that … like soybean ensures that what we bring to the grower is novel … We’re a long way there; we are developing traits …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels … User Programs deputy and head of the Microbial Systems group through the  DOE Office of Science Graduate Student …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… Congratulations to Tanja Woyke, who has been awarded the van Niel International Prize … for the triennium 2017-2020! Established by the University of Queensland in 1986, the van Niel Prize recognizes … Genomics Program since 2009 and heads the Single Cells group . Woyke also holds appointments as Adjunct Scientist …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … health is outside of JGI’s mission. However, analysis of novel secondary metabolites from plants could be a good.  … relative quantification of metabolites across your sample groups. We don’t typically do absolute quantification (uM …
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