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… became Platform Lead where she manages metabolomics production for community sequencing projects and heads R&D efforts … rich metabolite profiles from diverse biological and environmental samples in support of user science.  Capabilities … platform are a result of Dr. Louie’s establishment of a strong core foundation of robust mass spectrometry workflows …

… tree and soil dataset for understanding the dynamic relationship between poplar trees and their microbial partners. … Finally, using transcriptomics, researchers were able to study which of the trees were turned on or off in response … Laboratory (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic …

… about JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative … there a tool in this platform to search fungal genomes in metagenomes? A: Search in metagenomes is available from another JGI portal, IMG:  …

… In honor of the JGI's 25th anniversary in 2022, we have … as multiple copies across the chromosomes. In a follow-up study , researchers focused on two types of naturally … JGI Annual Meeting, David Lowry talked about a multi-year study his student conducted involving fungal rust pathogen …

… This single environmental trigger highlights efficiency for users requiring … bacterium's entire metabolism for chemical production, the study provides a blueprint that engineers can use to design … specialty materials and high-value bioproducts. This study offers a template — integrative analysis of multiple …

… the New Lineages of Life Group. His research is focussed on the discovery of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs multi-omics … and phylogenomics) and machine learning to find novel functions that may impact microbiome structure and biogeochemical …

… In honor of the JGI's 25th anniversary in 2022, we have … from individual environmental cells. The proof of principle study built off earlier approaches and offered a way for researchers to study the planet’s microbial diversity, much of which …

… By characterizing the structure and function of a methylthio-alkane reductase system, researchers … gaseous organic sulfur compounds in the atmosphere.  Beyond bacteria, this enzymatic machinery has potential as an … innovation ecosystem. “At JGI, we’ve done the synthesis, metagenome mining, all the way from sequencing to functional …