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A former JGI intern is now applying his internship lessons on … students to participate in the DOE Joint Genome Institute (JGI)-UC Merced internship program, Lawrence is now a … that time, a collaborative internship program between the JGI and UC Merced faculty focused on bioinformatics was …

… on developing new bioinformatics solutions to support JGI in adopting new genomics technologies, scaling up … analyses, next-generation transcriptome de novo assembly, metagenome and metatranscriptome assembly, Hadoop based on … scale data analysis in the cow rumen and sheep rumen metagenome projects. Standing at the intersection between the …

Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the … Associated Microbes and Parasites. Ul-Hasan credits her JGI-UC Merced summer internship for helping lay the … more advanced in my understandings than I would be at this stage without the internship and mentorship that followed. I …

Back in 2011, JGI-supported researchers published a paper in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data … Associate Professor Matthias Hess, also the chair of the JGI User Executive Committee, on how that study went from …

… by combining a study of microbial communities (metagenomics) and a chemical labelling approach. The Impact … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … a targeted technique called virusFISH. Using fluorescently tagged probes, the team was able to visualize the behavior …

Researchers at the JGI develop a tool to quickly and accurately identify mobile … approach. The tool was employed to build version 4 of the JGI’s  IMG Virus Resource (IMG/VR) , now with more than 15 … currently has more than 700,000 plasmids from genomes, metagenomes and metatranscriptomes. To lower barriers to …

This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this … Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …

… and the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … crops. For that reason, its genome was sequenced by the JGI in 2009 and it is considered to be a Flagship Plant. By … and process the samples starting at 10am Pacific time. JGI researchers helped develop the overall experimental …

Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published in  … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … CRISPR to knock out or activate genes, researchers at the JGI were able to monitor loss- and gain-of-function. The … uncharacterized biosynthetic gene cluster. That work by JGI researchers was published April 2022 in Cell Chemical …

… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Nature Communications on June 17 , 2022, was conducted by JGI Director Nigel Mouncey and research scientist Hiroshi Otani. Both are members of the JGI’s Secondary Metabolite Science Program, which Mouncey …

… from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research projects, hone … … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional exploration of Phage Impact on … of Rice and Arabidopsis Roots … Making Big Data Metagenomic Clustering Scalable … Cataloging Lineage Specific …