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2024 Progress Report
… 9.7 Megabases of DNA We processed 13,700 metabolomics samples With our users, 247 publications were published   … … and omics, and we continue to develop new capabilities in single-cell sequencing, spatial transcriptomics, and cell- and …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… to a type of archaea called  Euryarchaeota . These ancient, single-celled organisms thrive in most  environments devoid of … published in  Nature .  Researchers started by collecting samples from Yellowstone’s hot springs, an extreme …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… the biodegradation process, researchers collected microbial samples from wells at the site in 2007, 2009, and 2010. DNA was extracted from the samples that were sequenced by the U.S. Department of Energy … strain’s genome sequence was not in IMG/M when the NRAP samples were originally analyzed a decade ago. The NRAP site …
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When “The Blob” Made It Hotter Under the Water
… the atmosphere and keeps it in the deep ocean. With genomic samples collected before, during and after The Blob, … of British Columbia was already collecting ocean water samples when The Blob started. The samples were taken up and down the water column along the …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
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Three Join the JGI User Executive Committee
… is a staff scientist at PNNL and thrust lead on PNNL’s Soil Microbiome SFA. She serves as Secretary within the … in how microbes influence biogeochemical cycles in soils and sediments and plant-microbial interactions in …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
In “autopolyploids”, genome duplication occurs within a single species. By contrast, “allopolyploids” arise when … strawberries wasn’t completely accurate. “They took every single gene from octoploid strawberry, compared it to other …
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Axel Visel
… for large-scale in situ gene expression analysis in multicellular organisms. During his postdoctoral training at … Heart Association, Medical Research Council (UK),  Nature, Cell , Nature Genetics , Nature Methods ,  Genome Research (Editorial Board) , Cell Reports, Nature Structural and Molecular Biology, PLoS …
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CalTeach
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How Microbes Can Protect Plants in Drier Straits
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… in, on and around the planet–through techniques including single-cell genomics and metagenomics. They cited her “landmark” … JGI’s Microbial Genomics Program since 2009 and heads the Single Cells group . Woyke also holds appointments as …
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Cultivation of novel Atribacterota from oil well provides new insight into their diversity, ecology, and evolution in anoxic, carbon-rich environments
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