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User Support Analysis Group
User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the development of …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
Puerto Nuevo is a small town along the Baja California coastline in Mexico. While conducting early field … student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the area in … the research of 13 JGI scientists through the JGI-UC Merced Genomics Internship.     …
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Scaling Up Existing Skill Sets
Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI researchers for bioinformatics internship opportunities in fields … in my project was worth it whenever I was able to get a single line of code working and get the desired final …
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Annotation of metagenome short reads using proxygenes
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Four Draft Single-Cell Genome Sequences of Novel, Nearly Identical Kiritimatiellaeota Strains Isolated from the Continental Deep Subsurface
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… also holds a joint appointment with the University of California, Berkeley. Nowadays, Session is an Assistant … In “autopolyploids”, genome duplication occurs within a single species. By contrast, “allopolyploids” arise when … strawberries wasn’t completely accurate. “They took every single gene from octoploid strawberry, compared it to other …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… race was being waged. In this JGI@25 video, Susan Lucas, former JGI Production Department Head and current ESnet … the people and resources from these three national labs to form the DOE Joint Genome Institute in 1997. Over the next … years, and in collaboration with researchers at the Stanford Human Genome Center, JGI staff worked around the clock …
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Two decades of bacterial ecology and evolution in a freshwater lake
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Tracking the Origins of Methane-Producing Microbes
Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane … these samples by sorting the microbes into small pools of cells that were then sequenced separately. From these … more with JGI Microbial Program head Tanja Woyke and her Single Cells team member Frederik Schulz to screen the …
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Genomic profiles of four novel cyanobacteria MAGs from Lake Vanda, Antarctica: insights into photosynthesis, cold tolerance, and the circadian clock
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How Filamentous Fungi Sense Food
Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct … decide on the order in which this fungus breaks down plant cell wall materials including lignin, cellulose and hemicellulose. The Impact N. crassa is the …
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CalTeach
CalTeach is a program for undergraduate majors interested in developing a deep … as well as a unique opportunity to complete a California K-12 science or math teaching credential as an …
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