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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies … The Science The  Metagenome Stability Diagram — a tool within the Integrated Microbial Genomes and Microbiomes … and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which … mostly related to biofuels and feedstocks. And then we expanded that to include six more species, so in total, we …
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How to Target a Microbial Needle within a Community Haystack
… samples. The Science A team led by researchers at the Max Planck Institute (MPI) for Marine Microbiology has developed, … would allow researchers to focus on specific microbes within metagenome samples and associate their sequences with … view of a population’s genetic makeup and identifying viruses interacting with these populations. Development of …
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Trent Northen
… Berkeley Lab in 2008, Dr. Northen has had leadership roles within large DOE-funded research programs using mass spectrometry for energy and environmental research, including through the Joint … to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the …
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Supercharging SIP in the Fungal Hyphosphere
… probing helps ID novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial communities, with results published in the  November 2022 issue … National Laboratory was conducted under the auspices of the U.S. DOE under Contract DE-AC52-07NA27344. The work …
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JGI at the AGU Fall Meeting
… This year the AGU Fall Meeting, with the theme “Science is Society,” hosts sessions in New Orleans and online. Register for the meeting here. Here are some sessions of interest (all times in PST unless otherwise noted): …
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … to energy independence in the U.S. Not only does it pair with maize, the dominant source of bioethanol, in crop … Plant Datasets …
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JGI-KBase Panel at SACNAS
… Nov. 2: Getting Credit for Scientific Contributions of Any Size What is considered to be a scientific … contribution? This session will demonstrate to students (and their mentors) how to begin establishing a professional …
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one … the Integrative Genomics Building—the new home of the JGI and KBase in the heart of the Lab’s 200-acre campus—with the big move from leased space in Walnut Creek, Calif. …
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer … of Science User Facility, hosted three undergraduates and seven graduate students from UC Merced through their … had to say about their experiences and what they’ll take with them as they go forward in their careers.   Listed …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to … at the University of Hawai’i at Mānoa. I recently caught up with Karolina at the Plant and Animal Genomes, or PAG … Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean …
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Triggering Morel Fruiting
… A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis … the fruiting-related decomposition mechanisms of morel with multi-omic approaches, our results revealed a striking … Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean …
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