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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… 2011, JGI-supported researchers published a paper in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The …
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Taking Stock of the Known and Unknown Microbial Space
… global research community.  Published January 17, 2025 in Science Advances , researchers at the U.S. Department of … genes on nearly 2 million genomes, including isolates, metagenome-assembled genomes (MAGs) with varying quality … representation. “When it comes to isolate genome data, our real-world touchstones, we’re just scratching the …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… of the cereal crop’s genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are … such as heat waves, droughts and floods. The planet’s resources are being stretched by a growing human population and … of California (UC), Berkeley, UC Agriculture and Natural Resources (ANR), US Department of Agriculture P­­lant Gene …
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I-Min (Amy) Chen
Dr. I-Min A. Chen received her Ph.D. in Computer Science. Her research has been focused on semantic and … Lab. Dr. Chen is currently the Microbiome Computational Resource Lead at the JGI, responsible for the data management … I-MA et al. IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata. Nucleic …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… at the DOE Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley National … in developing and managing public viral genomics resources such as analytical tools and data repositories to two … (“contigs”) from thousands of ecologically diverse metagenomics samples. The work is supported by NIH Common …
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Work With the JGI! Tips for a Winning CSP Proposal
The JGI’s Community Science Program gives researchers access to all kinds of … episode, hear proposal tips from Tanja Woyke, who runs user programs at the JGI, and project manager Miranda …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… community involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency … populations rely heavily on groundwater as their only source of clean drinking water. Over 90% of the PCE in the … and adjusting the environmental conditions to encourage their growth. In this instance, vegetable oil was …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … of the tree of life. Used in tandem over the years, metagenomics and single cell genomics have afforded JGI …
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JGI Hosts GPU Hackathon in May
… processing unit (GPU)-based high-performance computing resources, an upcoming hackathon led by the Oak Ridge … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, aims to explore applications in the … and Oak Ridge National Laboratory (ORNL) to make sure our computational workload can leverage future HPC systems – …
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights … atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel and Simonetta Gribaldo of the … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly available metagenome …
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Yasuo Yoshikuni
Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since 2015. The mission of this program is … Editorial board member of Synthetic Biology (Oxford Journal) Review committee member of International Journal of … … DNA Synthesis Science Program … Education … Selected Publications … Awards and Honors …
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2025 NeLLi Symposium
… on venue and lodging.  … Once you have completed your meeting registration you will receive a link to submit an abstract in your registration confirmation email. PLEASE NOTE:  Only the … Functional Annotation Lead Steven Ahrendt , Biosystems Data Science … Brian Hedlund , University of Nevada, Las Vegas …
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