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Open Frameworks Training the Next Generation of Scientists
… provide opportunities for students and professors alike The Science In  PLoS Pathogens , a team of faculty and … The Impact For decades, the Department of Energy (DOE) has invested in training the next generation workforce … faculty and researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility, and the DOE …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… and other traits when migrating back to the ocean. The Science Scientists have discovered flagella in an unexpected … to spring. These biodiversity hotspots harbor specialized microbial communities living in extreme conditions. The … by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley …
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Fungus Fuels Tree Growth
… growth of poplar, a potential biofuel feedstock.     The Science The fungus  Mortierella elongata enjoys a dual … of particular interest to the U.S. Department of Energy (DOE). By better understanding how poplar responds to its … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  …
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The Case for Conservation
… “older than dinosaurs” could help improve crop yields.  The Science The fire moss Ceratodon purpureus is a short plant … to evolve so rapidly in gene content and structure. He and JGI Plant Program head Jeremy Schmutz already see how … working with researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Transcriptional response of the white-rot fungus Dichomitus squalens to polysaccharides reveals a co-expression network of plant biomass conversion related genes
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Homoeolog expression divergence contributes to time of day changes in transcriptomic and glucosinolate responses to prolonged water limitation in Brassica napus
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Gene Expression: From On-Off Switch to Dial
… gene expression helps identify variants in yeast genes. The Science Scientists have developed a more nuanced library … systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. … and included researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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You Can Move, But You Can’t Hide
… Researchers at the JGI develop a tool to quickly and accurately identify mobile genetic elements like plasmids and viruses. The Science Mobile genetic elements (MGEs) are genetic entities … at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley …
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How Maize Makes An Antibiotic Cocktail
… it against infections — using surprisingly few enzymes. The Science Maize ( Zea mays ) produces a plethora of … as  Sorghum bicolor — a  candidate bioenergy feedstock and  JGI Flagship Plant — could produce at least 15 zealexins. … genes were synthesized by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Computationally Classifying Fungal Lifestyles
… on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an … A team led by researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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iPHoP: A Matchmaker for Phages and their Hosts
… computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do … opens the possibility of using phages to engineer microbial communities. One day, these phages could boost … at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral … binding sites and which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and plants. His … Biology, University of California, San Diego Postdoctoral training in bioinformatics, Lawrence Berkeley National …
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