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Taking Stock of the Known and Unknown Microbial Space
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of the current state of microbial genomic biodiversity. Using publicly available genome sequence data generated over … Nikos Kyrpides and Natalia Ivanova conducted a census of publicly available bacterial and archaeal sequences. …
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A Social Science Experience
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JGI & KBase at PAG XXVII
… with the JGI Community Science Program, and how you can use the KBase system to accelerate your plant genomics … to BER-funded activities of plant systems that make use of these resources will present on their work. BER Plant … Analyses for Bioprospecting in the Green Lineage using KBase 6:51 PM Evolution of Sex Chromosomes in the Moss …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… .) This plan aligns the DOE Office of Science user facility with broader national efforts to promote and … of biological systems. The JGI strategic plan lays out how users and the global research community will bridge … solutions, the JGI is well-positioned to provide users with capabilities to create genomics-enabled insights …
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Atif Shahab
… for tracking JGI's sequencing projects and data warehousing. This platform streamlines project management, … analysis and reporting of sequencing projects and their status. Mr. Shahab has extensive experience in Laboratory … in Electrical Engineering, University of New South Wales, Australia; MS in Computer Science, University of New South …
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Access to Rock Star Scientists
… so nice and helpful.”     Mo Kaze, UC Merced JGI Mentor : Susannah Tringe, Microbial Systems Group “Everyone here is … their work. It’s fun to be around people who are generous with their time and like nerding out about the big stuff, …
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The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… achievements in science, technology, and diversity/inclusion by the annual  HPCwire Readers’ and Editors’ Choice … JGI, ESnet are U.S. Department of Energy Office of Science user facilities. The HPCwire Editors Choice Award for Best Use of HPC in Life Sciences went to the Berkeley Lab team …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… scale: fungi stretch a network of tendrils called arbuscules into a plant’s root cells, and both organisms … been able to study both sides of this interaction up close, using RNA sequencing to understand gene expression: one of … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Webinar: SIP technologies at EMSL and JGI
… and the JGI’s Rex Malmstrom provided background on the various isotope-related technologies available at JGI and EMSL … the pandemic. 3. Q: What instrument / method does the JGI use to pre-screen DNA for enrichment? A:  The JGI uses liquid chromatography–mass spectrometry (LCMS).  We do …
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JGI Announces 2023 Community Science Program Awardees
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … PIs on a JGI proposal,” said Tanja Woyke , JGI’s deputy of User Programs. “The proposed research by these PIs will … to facilitating their success. “ The CSP Annual Call is focused on large-scale genomic science projects relevant to the …
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its … evolved from a parasitic interaction with their soil fungus host, Rhizopus microsporus . Researchers found that endobacteria …
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