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JGI@25: Stories from Intern Alumni
… 2022 marks the JGI’s 25th anniversary . Over the next few months, we’ll be revisiting a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help … wet lab experiments, to computational modeling and virtual projects, hear intern alumni Candace Cole, Alessandro …
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Axel Visel
… in 2010. As the Deputy for Science Programs, he focuses on the development and implementation of strategic … genomes, which led to the discovery of thousands of genetic switches implicated in developmental and disease … major initiatives and more.  … Ph.D. (Dr. rer. nat.) in Biology, Max Planck Institute, Germany Postdoctoral …
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Triggering Morel Fruiting
… in China and involving Francis Martin from the Institut National de la Recherche Agronomique (INRA) in France and Igor Grigoriev from the U.S. … source.  The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every …
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I-Min (Amy) Chen
Ph.D. in Computer Science. Her research has been focused on semantic and object-oriented data modeling, and biological data management. She was one of the co-authors and key developers of the … Model (OPM) data management tools for scientific applications developed at Berkeley Lab. Dr. Chen is currently the …
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Environmental Genomics Group
Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify … Ladau, J. et al. (2019)  Spatial, Temporal, and Phylogenetic Scales of Microbial Ecology . Trends Microbiol. … detection of microbial diversity . Nature Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected …
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JGI Workshop at SIMB NP Meeting
Jan. 7: New Capabilities to Study Secondary Metabolism   Although there are still a large number of secondary metabolites yet to be discovered and their … intensive. This is often due to, for example, tight regulation of biosynthetic gene clusters (BGCs) in native hosts, the …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… hitchhikers. These organisms are abundant and yet exceptionally small, with mini genomes to match. As a result, they … to survive. To fill in their nutrient gaps, they must latch onto a larger host — often, a fellow archaeal microbe. … a better understanding of nutrient cycling across the planet. Summary To understand more about how archaeal hosts and …
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Complete genome sequence of Methanoculleus marisnigri Romesser et al. 1981 type strain JR1
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Viral Genomics Group
Microbes drive critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by viruses. Research in the viral … big (or small) can tailed phages be?  Nature Reviews Microbiology.   19 , 407 Berg, M. et al. (2021) Host population …
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Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050T (DSM 19838T) and Gramella portivictoriae UST040801-001T (DSM 23547T), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et
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The JGI announces 2024 awardees for our Community Science Program annual call
Adriana Corales, Hugh Cross, Megan DeMarche, Joanne Emerson, Matthew Hudson, Megan Keller and Julia Kelliher; [below] Vassili … annual CSP call is focused on large-scale genomic science projects relevant to the DOE’s Office of Biological and …
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Ben Bowen
Specializing in mass spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and … – Arizona State University, Bioengineering & Metabolic Biology … 2024 Berkeley Lab Recognition of Excellence Award …
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