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A Guide to Gene‐Centric Analysis Using TreeSAPP
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Jasmyn Pangilinan
… provides bioinformatics tools and analysis support for user science, with a focus on metagenomes. Passionate about … reliability, thereby accelerating critical insights for the JGI User community. …
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Draft Genome Sequence of Mn(II)-Oxidizing Bacterium Oxalobacteraceae sp. Strain AB_14
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Complete genome sequence of the phenanthrene-degrading soil bacterium Delftia acidovorans Cs1-4
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Extracting the Secrets of Secondary Metabolites
… of interest. Using CRAGE to domesticate target microbes, users of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User …
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2025 Progress Report
… JGI researchers demonstrate how their laboratory and data science efforts support users, advance foundational science and enable biotechnology … by the Biological and Environmental Research program, the Joint Genome Institute provides advanced genomic …
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Open Frameworks Training the Next Generation of Scientists
… involving academic faculty and researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility, and the DOE Systems Biology Knowledgebase … conducted by the U.S. Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE …
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A Step Toward Controlling Soybean Rust
… crop yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program … to counter soybean rust disease. Soybean itself is a  JGI Flagship plant genome , and JGI  published its genome sequence in 2010.       … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …
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Digging into Microbial Ecosystems Deep Underground
… these systems.” -Mike Wilkins, Colorado State University GI users and microbiome researchers Mike Wilkins and his … deep underground, and before the pandemic, they took the JGI on a sampling field trip. One of the questions they’re … have tapped into the resources and capabilities of both the JGI and the Environmental Molecular Science Laboratory …
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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome Analysis group. … In this role he supervises the Genome Assembly, QA/QC, and User Support Analysis teams. Together, these teams provide …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… UC Merced students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, JGI’s Zhong Wang and Science Programs Deputy Axel Visel … of graduate students summer research experience at the JGI. On July 26, 2018, the JGI celebrated the culmination of …
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PhycoCosm Tutorial
… omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of Science user facility at Berkeley Lab. Presented by Igor Grigoriev, …
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