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Soil metabolomics: Deciphering underground metabolic webs in terrestrial ecosystems
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Microbial polyphenol metabolism is part of the thawing permafrost carbon cycle
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A call for caution in the biological interpretation of viral auxiliary metabolic genes
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems … advanced integrative genome science capabilities in support of the DOE’s research mission.     Director's …
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W. Berkeley Kauffman
… Berkeley is responsible for receiving and processing user samples. His R&D work focuses on the development of new … in the areas of metagenomics, single-particle genomics, and metabolic engineering. …
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The Case for Conservation
… How sex chromosomes “older than dinosaurs” could help improve crop yields.  The Science The fire moss Ceratodon purpureus is a short plant with a complex genome . Now, high-quality reference genome sequences of the … This work was supported by NSF DEB-1541005 and start-up funds from UF to …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for NIH … is to develop tools, curated databases, and streamlined workflows that allow researchers to easily analyze viral … their roles and potential impacts. The work is supported by NIH Common Fund grant 1U01DE034196-01. The JGI …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … JGI user Ying Chang in the Spatafora lab describes the effort that led to the work published in Scientific Reports . … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of …
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Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director … for Computational Genomics, and led the computational efforts directed towards the sequencing, annotation, and … human chromosomes. After successful completion of the Human Genome Project, Professor Dr. Rokhsar ’s team has continued …
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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons … ripples through the trees in his backyard. Originally from northern California and one of the first students to … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar‐contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer
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Charting Progress toward Professional Goals
… Select interns look back on meaningful lessons from their summer experiences at … participated in the SEED Scholars @ LBNL program,  with support from  the SEED program at UC Berkeley. Sally Liao came … CalTeach initiative. During their time at the Joint Genome Institute, they interacted with interns from other …
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