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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to the  International Cocoa Organization (ICCO), global cocoa bean … used for systemic orthology to enable use for both cacao functional biology and breeding.     … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, … limits the ability of researchers to accurately perform functional assessment, host prediction, and phylogenetic … With the virus-host boundary clearly defined using functional annotation methods, it was possible to …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, 24 … toward generating “with unprecedented precision” the gene functional networks and regulatory networks of a single … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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JGI Announces 2023 Community Science Program Awardees
… Program call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility … five areas of emphasis: genes to function, plant and algal functional genomics, inter-organismal interactions, …
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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics … your Tree ever differ from NCBI Taxonomy? A(nswer): If you find that our trees are incorrect or need to be changed, please contact us and we’ll … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Access to Rock Star Scientists
… Through the JGI-UC Merced Genomics Internship, graduate students Candace Cole, Mo Kaze, Akshay Paropkari, Vicente Ramirez and Rhondene Wint had summer 2018 internships in Walnut Creek. The … Merced JGI Mentors : Tanja Woyke & Jessica Jarett, Single Cells Group “My experience at JGI has exposed me to the …
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Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for Computational Genomics, and led … AB in Physics, Princeton University, NJ MS in Theoretical Physics, Cornell University, NY PhD in … Publications … Award, National Cotton Council 2009 Friday Evening Lecturer, Marine Biological Laboratory 2000 John Simon …
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Taking Stock of the Known and Unknown Microbial Space
… diversity hotspots Over the past few decades, advancements in sequencing technologies have led to an abundance of … said co-first author Dongying Wu, a member of the Functional Annotation team within the JGI’s Microbiome Data … JGI’s Microbiome Data Science group, and Ivanova leads the Functional Annotation team. MAGs significantly expanded the …
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Four Researchers Join JGI User Executive Committee
… have been elected to the User Executive Committee of the Joint Genome Institute, a Department of Energy user facility … community and consider new initiatives in areas such as functional studies (e.g., a functional encyclopedia building on GEBA) and in microbiome …
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Yasuo Yoshikuni
… has been head of the DNA Synthesis Science Program since 2015. The mission of this program is to harness the power of DNA synthesis, strain engineering, and biosystems design for DOE-mission-relevant … to learn more about the program's areas of focus, major initiatives and more.  …
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Accelerating Metagenomics Discoveries with Deep Learning
… Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 participants in an online workshop to … data gathered from whole samples rather than single cells or isolated strains, is easy to generate, but … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… By characterizing the structure and function of a methylthio-alkane … that was previously only understood at a genetic level. Functional and structural experiments showed how the enzyme … metagenome mining, all the way from sequencing to functional characterization, and a project like this — an …
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