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Identifying the Microbial Cleanup Crew at a Superfund Site
… The work (proposal:  10.46936/10.25585/60000717 ) conducted by the U.S. Department of … Energy Joint Genome Institute (JGI) ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported …
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Ben Bowen
… NIH K25 Mentored Career Development awardee 1998-2003: NSF Graduate research training fellowship in biomolecular … spectrometry imaging. Analytical chemistry, 89(11), 5818–5823. Baran, R., Brodie, E., Mayberry-Lewis, J., Hummel, E., Da … computing and metabolite atlases. Metabolites, 5(3), 431–442. Yang, J., Rubel, O., Prabhat, Mahoney, M., & …
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When “The Blob” Made It Hotter Under the Water
… as hurricanes and droughts. Another one began in late 2013, when a large patch of warm ocean water about a third the … Laboratory (Berkeley Lab), as part of Hallam’s approved proposal through the Community Science Program . The proposal focuses on uncovering the metabolic networks …
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The Case for Conservation
… the value of their item. Part of that pleasure comes from finally having an answer to the question, “Why bother … of Evolution Rosemary Grant Award to S.B.C.; NSF DEB-1239992 to N.J.W.; the Emil Aaltonen Foundation and the … U.S. Department of Energy under contract no. DE-AC02-05CH11231. …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… microbes. In 2018, through a JGI Community Science Program proposal that started six years earlier, researchers put … with genomic DNA samples from Ruminococcus flavefaciens (XPD3002). With that sample, the Salk Institute team was able to …
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Tracing the Evolution of Shiitake Mushrooms
… Researchers sequenced 11 samples from Asia–Australasia and 13 samples from the Americas to trace the evolution … samples was a global collaboration that brought together 39 researchers from eight different countries. Genome and … by the HHMI and the Burroughs Wellcome Fund. The work (proposal:10.46936/10.25585/60001048) conducted by the US …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… 10 times larger. And yet, while they are found everywhere, comparatively little is known about viruses, much less those … the world, including data from several DOE-mission relevant proposals through JGI’s  Community Science Program . … As a result, the giant virus protein space grew from 123,000 to over 900,000 proteins, and virus diversity in this …
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Learning to Look
… By the numbers, the new approach detected inoviruses in 3,609 (6 percent) of the 56,868 microbial genomes and 2,249 of the 6,412 (35 percent) metagenomes mined for this study. “We’re simply … of these viruses, genomic analyses led the team to propose that the Inoviridae should be classified as an order …
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Understanding Wildfire Recovery, Starting in Soil
… work was supported through a USDA NIFA award (2021-67019-34608) to M.J.W. FTICR-MS analyses were performed under the … at the Environmental Molecular Sciences Laboratory (proposal ID 49615), which is a DOE Office of Science User … Research and operated under contract number DE-AC05-76RL01830. Metagenomic and metatranscriptomic sequencing was …
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The JGI Data Portal: Improving User Experience
… areas of focus and data and computational needs. Over its 23-year history, JGI has produced more than 13 petabytes of data, accessible through the Genome Portal. …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… the Way This project stems from a Community Science Program proposal that Martin submitted in 2012. At that time, the … person at the Walnut Creek Marriott the week of September 30 – October 4, 2024.  …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… The work (proposal:  https://doi.org/10.46936/10.25585/60000691 , and  https://doi.org/10.46936/10.25585/60007554 ) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by …
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