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Bidirectional titration of yeast gene expression using a pooled CRISPR guide RNA approach
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JGI Scientists Pen Genome Watch Articles
… of Science User Facility located at Lawrence Berkeley National Laboratory, are sharing their expertise in environmental genomics by writing for the column Genome Watch in  … .  The latest article, published January 27, is about engineering plants and their microbiomes for more …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and … the PI. We currently use the ‘Base Modification Analysis’ tool within PacBio SMRT link, which works well for 6mA and … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… A two-day kick-off meeting held at Lawrence Berkeley National Laboratory (Berkeley Lab) marked the visit of an esteemed interdisciplinary delegation from the University of Duisburg-Essen (UDE), Germany with … methods in conjunction with microfluidics into a powerful tool to address many of the research questions discussed,” …
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Fungus Fuels Tree Growth
… Researchers start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science The fungus  Mortierella elongata enjoys a dual lifestyle; it can thrive in the soil as … not well understood — scientists can better fine-tune their engineering efforts of both plants and root microbiomes to …
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Soil virus offers insight into maintaining microorganisms
… researchers have identified a virus protein tied to carbon cycling.  The Science Through a collaborative effort, … of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). Using 5,000 images of … soil health. Summary Soil viruses are a reservoir of genetic diversity and capable of transferring genes from one …
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Searching for new branches on the tree of life
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… In honor of the JGI's 25th anniversary in 2022, we have … number of notable achievements that showcase our collaborations and capabilities to enable great science that will help … today as a partnership with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., …
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The Case for Conservation
… help improve crop yields.  The Science The fire moss Ceratodon purpureus is a short plant with a complex genome . Now, … technologies applied to the effort. The Impact Found on all continents, including Antarctica where it is a major … student Sarah Carey, now at the HudsonAlpha Institute for Biotechnology, reported that high quality genome references …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science … the data and compute platforms and bioinformatics annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled capabilities for … S., Pelikan, C., Scannell, D., Serber, Z., Shock, J., Sneddon, M., and Yang, X. Metagenomic library and natural product …
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Making a Lichen Together
… clearly. The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) … genomes and transcriptomes could help inform efforts at bioengineering symbiotic microbial consortia for bioenergy … finding that each lichen partner can sexually reproduce: genetic recombination during sex could increase the fitness …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute … with the University of California, Berkeley. Nowadays, Session is an Assistant Professor at Binghamton University in New … how crops and model organisms may evolve.  Determining the genetic codes of plants is often challenging because in many …
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