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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising juniors who participated in internships at the DOE Joint … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates … to the Genomes OnLine Database (GOLD) administered by the DOE JGI. T.B.K Reddy, Kaushal‘s mentor, described his …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Chytridiomycota (the “chytrids”).  A collaborative team led by Joey Spatafora at Oregon State University, Jason Stajich … Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse … Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. Department of Energy (DOE) Joint Genome … Microbiology . Their study focuses on the discovery of new populations within the Korarchaeota, one of which contains …
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SNP Assay Development for Linkage Map Construction, Anchoring Whole-Genome Sequence, and Other Genetic and Genomic Applications in Common Bean
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Microbial co-habitation and lateral gene transfer: what transposases can tell us
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User Executive Committee Charter
… the JGI user community and is responsible for providing input and advice on JGI policies and practices that … UEC leadership. The Incoming Chair will be elected annually by the UEC members and will serve a one-year term in that … User meeting, with reasonable travel expenses to be paid by the JGI. There will be at least one other meeting held by …
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Common Ancestry and Novel Genetic Traits of Francisella novicida-Like Isolates from North America and Australia as Revealed by Comparative Genomic Analyses
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The INSIG2 rs7566605 genetic variant does not play a major role in obesity in a sample of 24,722 individuals from four cohorts
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A User-Centered Approach to Accessing JGI Data
… common set of metadata. For Steve Wilson, JGI’s Systems Engineering group lead, the Data Portal reflects a structural … of ‘baseline metadata’ across the files that are submitted by each scientific program,” he said. “If each kingdom … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a … that may promote soil health. The work was enabled in part by a community data portal of the U.S. Department of Energy … primary focus — replicating itself.  Chitin is found in the cell walls of fungi and the exoskeleton of insects. It is …
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A Community Resource for Secondary Metabolite Researchers
… Collaboratory encourages user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most living creatures for energy, growth and … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …
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The fungus that made itself at home
… Retracing how the dry rot Serpula lacrymans adapted to a new ecological habitat. The Science By comparing genetic information from similar organisms, … Summary Unlike white rots, brown rots break down only the cellulose and hemicellulose, leaving the lignin behind. The …
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