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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… the Department of Energy (DOE) colleagues. “At that time (1986) 98% of the human genome was thought to be junk DNA, so there was quite a bit of resistance to use resources to sequence it,” Patrinos said. After many … of a genomic arms race as they recognized the private industry’s interest in simultaneously sequencing the human …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … in these gaps of knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on …
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Boosting Small Molecule Production in Super “Soup”
… to keep processes running smoothly. As  reported August 26, 2021, in  Nature Communications , researchers led by Hal Alper at The University of Texas at Austin and Michael Jewett of Northwestern University describe … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Building Wet and Dry Lab Skills
… funded by a DOE training grant.  Building off the previous year’s project, undergraduate interns Tamyra Long and … project - they also worked with Sharon Greenblum from the User Support Analysis team to analyze plant microbiome data … the plants and extracting DNA. They also analyzed 16s amplicon data to determine microbiome composition. This …
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JGI Accepts 17 Proposals for Community Science Program
… and how ecosystems are adapting to stresses. A total of 17 proposals have been approved through the annual Community … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of 50 letters of intent submitted. Many of the proposals focus on harnessing genomics to developing sustainable …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… The Science In a recent Microbiome paper , scientists focused on the conifer needle microbiome. The phyllosphere, … area of forest ecosystems as past studies have mainly focused on root-associated microbiomes. Scientists conducted a … of conifer needle microbiomes across six sites spanning a 1000km section of the Rocky Mountains. This represents the …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… be single bacterial cells, visible to the naked eye. The unusual size is notable because bacteria aren’t usually … Antilles and a co-first author on the study, performed the 16S rRNA gene sequencing to identify and classify the … can find some TEM pictures and see what look like pepins so maybe people saw them but did not understand what they were. …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  … is central to our ability to offer host-engineering for our users,” says JGI Director Nigel Mouncey. Using CRAGE, JGI has established a portfolio of microbial …
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JGI announces 2025 Functional Genomics awardees
… from left: [Above] Hao Chen, Matthew Cope-Arguello, Theophilus Olufemi Isimikalu, Todd H. Oakley, BJ Philmus and Aaron M. Roshotte; [Below] Paul Scesa, Kathleen … and biotechnology innovation. Below find a list of the 11 researchers accepted for 2025.  Proposals are accepted …
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Taking Stock of the Known and Unknown Microbial Space
… to the global research community.  Published January 17, 2025 in Science Advances , researchers at the U.S. … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of the current state of microbial genomic biodiversity. Using publicly available genome sequence data generated over …
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JGI & KBase at PAG XXVII
… Animal Genome XXVII Conference (PAG) takes place January 12-16, 2019, in San Diego, Calif. Representatives from … with the JGI Community Science Program, and how you can use the KBase system to accelerate your plant genomics … to BER-funded activities of plant systems that make use of these resources will present on their work. BER Plant …
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Atif Shahab
… Since 2012, Mr. Shahab has led the development of an integrated … for tracking JGI's sequencing projects and data warehousing. This platform streamlines project management, … analysis and reporting of sequencing projects and their status. Mr. Shahab has extensive experience in Laboratory …
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