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… genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies Opportunity Program (ETOP) , … The work aligns with the ETOP mission of providing JGI users with the most current technology and expertise in … characterization of community members and their genome-encoded metabolic capabilities and interactions. Supported by …

… researchers have known that many datasets miss a key part of microbial genomes: the mobile genetic elements, or MGEs, … Bagby (Case Western Reserve University) and Simon Roux (JGI) as they talk about their recent work on a time series from Sweden’s …

… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … cycles. While most organism’s genetic information is encoded in DNA, with RNA delivering the instructions inside …

… With increased lignin and iron, engineered poplar can be used to develop bioproducts for industrial applications. For … Described as the “DOE Tree,” poplar is considered one of the  Flagship Plants for the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… The User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse … epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product …

… 2024 was a year of firsts, including the flagship internship program between … success of the UC Merced internship program, they left the JGI more confident and ready to tackle real-world scientific … allowed them to:  Learn new skills. Experience industry-level work and coding. Receive mentorship, network and …

… Using the IMG/M data portal, researchers have identified a … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … the IMG suite, JGI retrieved 142 of the GH75 AMGs, which encode enzymes that break down chitin. A protein tree was then …

… the genetic codes of plants is often challenging because in many plants chromosomes are present in more than two … Session and Rokhsar, building on work with former JGI postdoc Jarrod Chapman, developed a method to correctly … an early algorithm and developing it in order to talk about the subgenome identity.”  These days, Session is …

… Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy sources. More … popularizer and communicator (and at one time, the spouse of Lynn Margulis). The information was then used to … of UC Berkeley geomicrobiologist Jill Banfield, a longtime JGI collaborator, postdoctoral fellow Paula Matheus …

… Ancient  Chloroflexota s ditched their flagella and other traits when … microorganisms for biofuel production and other sustainable applications. Summary Hot springs are … to swim around. However, genome and metagenomic sequencing conducted by the U.S. Department of Energy Joint Genome …