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A One-Stop Shop for Analyzing Algal Genomes
… to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one … that allows algal scientists and enthusiasts to look deep into more than 100 algal genomes, compare them, and … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Pinning Down a Piece of Photosynthesis
… of a cyanobacterial protein, researchers have new insights into how these ocean photosynthesizers cycle carbon in … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 … biological and environmental samples in support of user science.  Capabilities offered by the platform are a result … nonpolar metabolite analysis, creation of large metabolite databases by running 1000s of metabolite standards, and …
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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome Analysis group. … provide analysis support and R&D for production and user science. He received his Ph.D. from the Wellcome Trust … in human and other vertebrate genomes. When he joined the JGI, he worked as a project scientist and then as a research …
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Approved Proposals
… proposals from previous fiscal years for our Community Science Program (CSP) as well as the Facilities Integrating Collaborations for User Science (FICUS) program.  …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for data contextualization The Science Since its launch 25 years ago, the  Genomes OnLine … Database has matured from six projects on a spreadsheet into a flagship  genomic metadata repository, making curated …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of a virus relative to its host (inferred through sequence data) can suggest different predatory behaviors. A high …
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Examples: Successful LOIs & Submissions
… examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful … and Facilities Integrating Collaborations for User Science calls. These documents have been shared with …
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A Community Resource for Secondary Metabolite Researchers
… Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of "primary … gene clusters (BGCs.) As reported in the recent Database issue of the journal Nucleic Acids Research , … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub … at the DOE Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley National … viral genomes. This includes (i) classifying viruses into groups that can be compared across studies, (ii) …
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Transcriptomic data sets for Novosphingobium aromaticivorans DSM12444 and a ΔSARO_RS14285 mutant grown in the presence of glucose and either protocatechuic, vanillic, syringic, or 4-coumaric acid
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI researchers for bioinformatics internship opportunities … I got to work with an enormous set of fungal genomics data. For me, it was an opportunity to adapt my existing …
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