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Honey Bee Gut Microbiota Divvy Up Dinner
… what biochemical processes? Now, an international team of researchers has identified the major metabolic roles of … shared between honey bee and bumblebee gut microbiomes. Researchers found that pollen’s pectin and hemicellulose are … including collecting and analyzing the honey bee gut metagenome, which was done with the help of the US Department …
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a virus protein tied to carbon … cycling.  The Science Through a collaborative effort, researchers have identified a protein in soil viruses that … impact on the microbial communities within soil. Using metagenomics, scientists can shed light on hidden components, …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… trichocarpa,  or the poplar tree, are potential biofuel feedstocks of interest to the U.S. Department of Energy … (DOE). (Poplar is a Flagship Plant.) To engineer them, researchers need to select and breed cultivars for the next … some songbird W chromosomes — suggest that they are advantageous enough to have evolved multiple times independently. …
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Pinning Down a Piece of Photosynthesis
… the structure and function of a cyanobacterial protein, researchers have new insights into how these ocean … experiments at universities and national user facilities, researchers found that this protein detects iron and … Grosjean, the first author of this paper. Grosjean is a research scientist at the U.S. Department of Energy (DOE) …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… the CRISPR-Cas9 investigations began as “curiosity driven research.” In the early 2000s, UC Berkeley colleague and … (already known as CRISPR) that came up in her team’s metagenomic  samples . While Banfield continued exploring the … to address a wide range of new questions — from basic research, like learning how to optimize the gene editing …
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Mindfully Moving JGI
… unneeded chemicals, unopened lab consumables, unneeded Lab tagged equipment, recyclables, and general waste that would … filled nearly 24 speedpaks, and more than half of them were tagged for waste streams other than the landfill. Naca added … you’re diverting waste appropriately and a certain percentage of it is going everywhere except landfill.” At each …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… gut. To better understand the dynamics of this molecule, researchers developed the first chemiluminescent biosensors … a wider range of environments. This new technology enables researchers to directly measure cyclic di-GMP levels in … By building on a previously developed combined approach, researchers at the University of California, Berkeley and …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… microbiomes. Scientists conducted a shotgun metagenomic survey on three types of conifers–limber pine, … (DOE) Office of Science’s Biological and Environmental Research program because of its relevance to understanding … of California (UC) Merced scientists conducted a shotgun metagenomic survey of conifer needle microbiomes across six …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… and transcriptome analysis of microbial, fungal, and plant research projects.  More recently, these long-reads have … applied to DNA methylation analysis as well as improving metagenome assemblies. Q&A from the Webinar: Input & … weight DNA) is an important factor as well for PacBio metagenomes. Q: How many PacBio metagenomes can I submit?  How …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… the complex organic matrix of the forest floor, a team of researchers have found that there is a striking division of … to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from … National Laboratory, to create the database. JGI provided metagenome and metatranscriptome sequences, as well as …
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Igor Grigoriev
… and PhycoCosm portal. Dr. Grigoriev engaged thousands of researchers in genome projects and organized numerous … Physics Institute, Moscow, Russia PhD in Molecular Biology, Research Institute for Genetics and Selection of Industrial … Clarivate/Thomson Reuters Highly Cited Researcher/The World’s Most Influential Scientific Minds, …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… Researchers looked across many organisms to see that … leaving potential targets for crop engineering untouched. Research recently published in  The Proceedings of the … located at Berkeley Lab. In addition to providing metagenome mining for computational analysis of the AT enzyme …
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