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Partners
The JGI leverages its existing partnerships and develops others providing … advance the science and serve as impact multipliers . The JGI has a long-term partnership with the HudsonAlpha … and other efforts. The JGI works closely with DOE computational facilities (e.g., the National Energy Research …
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome … His responsibilities include the development of novel computational tools to identify virus sequences, the design of new …
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I-Min (Amy) Chen
Dr. I-Min A. Chen received her Ph.D. in Computer Science. Her research has been focused on semantic and object-oriented data modeling, and biological data management. She was one of … currently the Microbiome Computational Resource Lead at the JGI, responsible for the data management infrastructure of …
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Kjiersten Fagnan
Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale …
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User Executive Committee
The UEC represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their science including technical …
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An Automated Tool for Assessing Virus Data Quality
CheckV can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced …
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Computationally Classifying Fungal Lifestyles
As a proof of concept, researchers developed an algorithm that “taught” a computer how to classify 101 representative … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Dothideomycetes . The data allowed the team to reclassify 25  Dothideomycetes species, and also provides more …
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Eelgrass Proves to Be Much Younger Than We Thought
Recent study shows eelgrass has been around about 2.5 million years less than … one of the most abundant plants in the ocean, originated in Japan before spreading around the globe. Now, … ago. The study shows that figure is likely closer to a mere 250,000 years — with many key colonization events in the …
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Similar Microbial Communities Found on Two Distant Seafloor Basalts
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Large-scale contamination of microbial isolate genomes by Illumina PhiX control
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Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community
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The integrated microbial genomes system: an expanding comparative analysis resource
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