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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… a quest to better understand the factors and mechanics of gene expression in over 400 fungi species. “Fungi are the … “survival of the fittest” theory — the most expressed genes found across each of the fungal species were … protein-coding hotspots. “Ensuring that the most expressed genes are also the most efficient at making proteins likely …
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Benjamin Cole
… their growth program, and on how plants coordinate their gene expression with light and temperature oscillations … how microbes can colonize plant roots, focusing on genetic components required for effective colonization. In …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… domesticate some 60 strains, inserting into them a genetic sequence that acts as a “landing pad.” Mouncey adds, … can deliver multiple types of payloads, such as individual genes, whole pathways, genome-editing tools, and reporters.” JGI-developed genetic engineering technique CRAGE lands the cover of ACS …
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A Community Resource for Secondary Metabolite Researchers
… secondary metabolites are produced by groups of genes known as biosynthetic gene clusters (BGCs.) As reported in the recent Database … system known as IMG-ABC. That portal contained biosynthetic gene clusters and secondary metabolites information from …
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Fungus Fuels Tree Growth
… studied what happens to the tree’s physical traits and gene expression when the fungus is present. The Impact Black … changes in plant roots),  M. elongata  doesn’t have as many gene products that directly influence plant phenotype, such … the plant to have leakier cell walls and weaker defenses in general; the fungus decreased the expression of poplar genes …
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Fungal Friends or Foes in Plant Roots
… plant-associated fungi. Their analysis identified fungal gene families that help determine if these fungi act as … genomes on the JGI data portal MycoCosm . They looked for genes known to be involved in fungal-host interactions and identified 84 gene families that were common in fungi that live within …
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Training the Next Generation of Talent
… worked with Nicole Johnson in Wang’s group on developing an algorithm for RNA-Seq assembly. RNA-Seq is a technique for … could be considered.” Olmstead’s project focused on the genetic mechanisms of chemotaxis in the Arabidopsis … getting a picture of the amount of data that’s going to be generated at academic level in a few years as it’s getting …
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2024 Progress Report
… use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of sequence We synthesized 9.7 … other omics technologies with computational analysis and prediction. Together, and in an integrated fashion, these … the number of known protein families by using AI clustering algorithms to identify billions of protein sequences in …
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A Plantiful Future: Xiaohan Yang
Laboratory, believes they can. And, what’s more, that using gene editing technology to conscientiously mix traits of …
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JGI announces 2023 CSP Functional Genomics awardees
… and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the six …
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A Grass Model to Help Improve Giant Miscanthus
… (polyploidy) and insights into the dynamics of gene expression as it grows back vigorously year after year … and more complex patterns of inheritance. The additional genes provided by these chromosomes can contribute to novel … polyploidy, and how genomes respond to extra chromosome and gene copies, will help researchers improve Miscanthus …
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JGI announces final round of 2022 Functional Genomics awardees
… and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the final …
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