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2024 Progress Report
… and professional expertise to support the global research community in studies of complex biological and environmental systems. We optimize our service to the community through responsibly managing our people and … Our primary objective is to serve our user community with large-scale advanced genomic capabilities. …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… the world, resulting in a five-fold increase of RNA virus diversity. “The world of viruses around us is vast, and we … This is also the type of synergistic and collaborative community spirit that the JGI advocates for and actively … metatranscriptome datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the … paper is the first one to survey a huge amount of natural diversity and say, ‘Yeah, there are genes out there that … back to identify candidate genes.”  Through the JGI’s Community Science Program , sequences of several hundred …
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Tanja Woyke Elected to American Academy of Microbiology
… National Laboratory (Berkeley Lab), Woyke has led JGI’s Microbial Genomics Program since 2009 and heads the Single … space grew from 123,000 to over 900,000 proteins, and virus diversity in this group expanded 10-fold, offering the … have scientists of Dr. Woyke’s caliber support the JGI User community in accessing our resources and help them to push …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… science, creating opportunities for the global research community. The U.S. Department of Energy (DOE) Joint Genome … strategic plan lays out how users and the global research community will bridge fundamental knowledge gaps to advance … for bioproducts to support the bioeconomy. Functional diversity theme. Reading the genomes of individual organisms …
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Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions
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An Integrated Dataset to Understand Ecosystem Interaction
… the dynamic relationship between poplar trees and their microbial partners. The Science To help better understand … bioenergy tree, poplars are known for their genetic diversity. They hold economic value as both biofuel … metabolomic profiles — combined offers the global research community insights into how these trees adapt to different …
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JGI Workshops at PAG
… of algae, and sampling of the length and breadth of algal diversity, the numbers of sequenced algal genomes, and the … field and bring it to the attention of the wider genomics community. Jan. 13 workshop: BER Plant Genomic Science In … We will describe how to apply for a project with the JGI Community Science Program and how you can use the KBase …
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Game On: High School Students Drive Everglades Metagenomics Study
… of Education (AICE) Biology class at Florida’s Boca Raton Community High School. The course had a defined set of … partnership. The class decided to do an environmental microbial community (metagenomic) soil study in an untouched … They chose this location because much is unknown about the diversity of organisms (taxonomy) and particularly those in …
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Soil virus offers insight into maintaining microorganisms
… may promote soil health. The work was enabled in part by a community data portal of the U.S. Department of Energy (DOE) … health. Summary Soil viruses are a reservoir of genetic diversity and capable of transferring genes from one host … to another, which can have a significant impact on the microbial communities within soil. Using metagenomics, …
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The Architecture of Metabolism Maximizes Biosynthetic Diversity in the Largest Class of Fungi
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Giant virus diversity and host interactions through global metagenomics
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