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… Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a recent  … paper , researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. Commonly known as … ) conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … the low maintenance, it can produce an impressive amount of biomass which could then be converted into sustainable …

… from their summer experiences at the JGI Berkeley Lab offers a variety of programs to help inspire and train the next generation of … Genomic data scientist Deanna Beatty sat down with interns hosted at the JGI through three different internship …

… UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first … 2016.  She described the microbial diversity patterns of Puerto Nuevo’s coastal waters and sediment with … californicus (and cone snails in general) outside of mostly anecdotal information,” Ul-Hasan noted. “I spent a …

… PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a … bioremediate toxic substances has led to the development of cost-effective environmental cleanup strategies. Summary In New Mexico, the city of Española, the Santa Clara Pueblo and its nearby rural …

… and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to … tetranucleotide frequencies, and an area’s environment hosts particular organisms and metabolisms. This implies … update the Metagenome Stability Diagram. The tool is hosted on the National Energy Research Scientific Computing …

… plant mass for conversion to sustainable, alternative biofuels and bioproducts. This study lends insights on how the … 5, 2018 in The ISME Journal , a team led by University of Oslo scientists and including researchers at the Joint Genome Institute, a DOE Office of Science User Facility, compared the genomes of two …

… The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial … with results published in the  November 2022 issue of Microbiome . High-throughput stable isotope probing (SIP) … and improve results. Applying this method to the study of a particular fungi, researchers identified novel …

… begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, … the microbes within the soil. To get a clearer picture of how burned ecosystems return to health, researchers have taken a look at microbial genomes across a spectrum of burned soils. By connecting microbial genes with …

… the AGU Fall Meeting, with the theme “Science is Society,” hosts sessions in New Orleans and online. Register for the meeting here. Here are some sessions of interest (all times in PST unless otherwise noted): … University (short talk): “Predators of the Deep: virus-host dynamics in the terrestrial subsurface” 2pm Convention …

… been utilizing metagenomics as a way to study a collection of hard-to-culture microbes, but the efficacy of this approach would be greatly increased by having the ability to reconstruct complete genomes of individual, unknown microbes in the community. Since the …

… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint … who also holds a joint appointment with the University of California, Berkeley. Nowadays, Session is an Assistant Professor at Binghamton University in New York. He and Rokhsar …