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Expanding Virophage Diversity
… are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages … & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the virophage marker gene MCP, they were able … including over 28,000 unique MCP sequences.  Further analysis led to the identification of 328 “high quality” (based on …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different … help regulate the global carbon cycle — fixing, transforming, and respiring carbon. Understanding the metabolisms … This research was supported by grants from the Simons …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have … challenges, characterizing viruses is a key step. For decades, though, many viruses have been somewhat …
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2025 Progress Report
… demonstrate how their laboratory and data science efforts support users, advance foundational science and enable biotechnology discoveries. (Pictured from left to right: Peng Wang, … Mi Yan, Deanna Beatty)    Vision  Lead AI-driven genomic innovation to advance biotechnology. Mission  As a U.S. …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… Newly developed chemiluminescent biosensors shed light on how bacteria function and … The Science Cyclic di-GMP (Guanine Monophosphate) is found in nearly all types of bacteria and interacts with … in regulating microbial cellulose production and biofilm formation, which affects a number of environments, including …
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Igor Grigoriev
… Dr. Grigoriev joined the JGI in 2003, following his postdoctoral training at … of Plant and Microbial Biology at University of California, Berkeley. He contributed to the Human Genome Project … Igor Grigoriev is the Fungal & Algal Science Program Head at the JGI. Click …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… Scientists have discovered that the candidate bioenergy feedstock … led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of … More genome copies in switchgrass leads to increased climate flexibility …
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Annual Genomics of Energy & Environment Meeting
… Thank you for joining us at the 2024 DOE Joint Genome Institute (JGI) … of Energy & Environment Meeting! The JGI convenes this annual gathering of leaders from diverse disciplines to … synthesis, metabolomics, data analysis, and new technology developments – that the JGI offers through proposal calls on …
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JGI Workshops at PAG
… sequenced algal genomes, and the quality of those genomes, is rising. The purpose of this Workshop is to illustrate the … In this workshop, we will present current and ongoing developments at the JGI and KBase toward integrative biology … hear from researchers who are applying genomic sequence information to BER funded activities of plant systems. We will …
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JGI@25: Studying Sorghum’s Survival Skills
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our … challenges. Sorghum stands out as a candidate feedstock for biofuels thanks to its drought and flood hardiness. Even … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are becoming common images in … by a growing human population and increasing demand for agricultural products.  Sorghum bicolor (L.) Moench is an African grass that adroitly handles droughts, floods …
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UC Merced Interns Reflect on Their JGI Summer Projects
… Over the course of eight weeks this past summer, 10 students from UC Merced worked closely … develop presentation skills as well as build their network in the field of genomics and scientific research. The topics … language processing techniques to categorize genetic information. Learn more about their work here in a series of …
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