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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint … but also the ability to understand the complicated evolutionary history of strawberry in such detail is … Session mentioned that the analysis for determining the evolutionary history of strawberries wasn’t completely …
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A Community Resource for Secondary Metabolite Researchers
… user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … growth and reproduction—most organisms produce a set of "secondary metabolites," chemical compounds that often … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …
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Leo Baumgart
… his doctoral research in synthetic biology and microfluidics at the University of California, San Diego. As the Sequencing Technology … diverse plant tissues. Dr. Baumgart focuses on expanding functional genomics capabilities through process automation … BS in Biochemistry and Cell Biology, University of California, San Diego PhD in Molecular Biology, …
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From Textbook to Real World Applications
… When local students Maya Hanck of Carondelet High School and Tim Kostolansky of De La Salle High School expressed an interest in learning … synthetic biology, Robert Evans and Jan-Fang Cheng in the Functional Genomics group took it upon themselves to mentor …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI researchers Lee … , was  recently published in the journal  Annual Review of Biomedical Data Science . The following guest piece was … are at fending off the infection, and how long this evolutionary arms race has been going on.  Answering these …
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Katherine Louie
… efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … techniques, the platform delivers rich metabolite profiles from diverse biological and environmental samples in … for integrating metabolomics with genomic data (MAGI) for functional annotation and identifying unknown compounds …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles in plant health and environmental … they found that microbial community composition and functional potential varied across tree species and sites, … It also provides further insight into the ecology and functional potential of the phyllosphere, extending beyond …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics as part of our  2022 … users at our 2022 Annual Meeting, Wessler discussed the revolutionary work of Barbara McClintock, who discovered … mutations that, for example, turn maize (where McClintock originally discovered TEs) into corn starch. “There are lots …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users through a BER … is discoverable and accessible. Linking the resources of powerful institutions like the JGI, KBase, NCBI, NMDC, … access to diverse datasets that deepen our understanding of how organisms interact with each other and with their …
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Fishing for Novel Cellulose Degraders
… genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is a … screen, they can now identify microbes with specific functional characteristics. When they tested the screen … those that are in low abundances—and their functional roles in their community. This study shows how …
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Crysten Blaby-Haas
… Dr. Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials Initiative, a partnership … at Berkeley Lab. She is spearheading the development of a joint user capability between the JGI and Molecular … Microbiology and Cell Science in 2011 from the University of Florida, working with Valérie de Crécy-Lagard on using …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… for the global research community. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released … jointgeno.me/2024StrategicPlan .) This plan aligns the DOE Office of Science user facility with broader national … solutions for bioproducts to support the bioeconomy. Functional diversity theme. Reading the genomes of …
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