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Forming Scientific Connections and Building Community
… on their summer projects. Watch the short video here to see what they had to say about their experiences and what … “ Exploring the epigenetic basis of pathogenicity in bacteria” Erika Maquiling : “Being a JGI intern means going … to me. Starting my PhD straight out of undergraduate, I have not had the experience to work in other settings. Being …
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Jeremy Schmutz
… involvement with the DOE Joint Genome Institute dates back to 1997, when he was working for the Stanford Human Genome … the Plant Science Program Head at the JGI. Click to learn more about the program's areas of focus, major initiatives … Award … Plant Science Program … Education … Selected Publications … Awards and Honors …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
Science Program. Fashioning DNA outside a cell is key to interrogating what genes do, how they work, and applying … environmental and energy challenges. But not all scientists have the expertise and resources to do DNA design and … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora crassa . The … carbohydrates, and then convert them into simple sugars. More importantly, when faced with a veritable buffet of … enriching the work being done as part of the 1000 Fungal Genomes Project. Funding for the project was also provided …
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Extracting the Secrets of Secondary Metabolites
… for growth yet essential for survival, may now be easier to characterize following a proof-of-concept study in which … pest control. Secondary metabolites are highly regulated in bacteria, making it difficult to identify which pathway … for fuel.  The impact of the pairing could prove to be much more far-reaching. The compatibility of CRAGE and CRISPR …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
Nowadays, Session is an Assistant Professor at Binghamton University in New York. He and Rokhsar have  recently published a Nature Communications paper that … because in many plants chromosomes are present in more than two copies, a condition known as polyploidy. The …
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A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans
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Identifying the Microbial Cleanup Crew at a Superfund Site
… site. The chemical PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via … from a local dry-cleaner. Researchers  identified two bacteria,  Dehalococcoides mccartyi and  Dehalobacter … by continuing to access the JGI’s  Integrated Microbial Genomes and Microbiomes (IMG/M) system. For example, the …
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Novel Insights into the Diversity of Catabolic Metabolism from Ten Haloarchaeal Genomes
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Ten Years of Maintaining and Expanding a Microbial Genome and Metagenome Analysis System
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Igor Grigoriev
DOE Joint Genome Institute in 2003, following his postdoctoral training at UC Berkeley and work in the pharmaceutical … CA … Lankiewicz et al (2023) Lignin deconstruction by anaerobic fungi.  Nature Microbiol. 8(4):596-610. Nelson et al … … Fungal & Algal Science Program … Education … Selected Publications … Awards and Service …
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Len Pennacchio
… has focused on applying state-of-the-art molecular methods to address wide-ranging questions existing in biology. He … technical JGI directions for DOE User science. … Complete Publications Genomic Technologies Program Defining the vast … … About the Deputy of Genomic Technologies … Selected Publications … Awards and Honors …
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