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Adopt-A-Genome
… In this episode, undergraduates adopt genomes that the JGI … available for future research. Hear from Rekha Seshadri (JGI) and Matt Escobar (California State San Marcos) about …
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Danielle Goudeau
… Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines custom flow …
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JGIota: Looking Back at Methane-Making Microbes
… We count on livestock for food and fiber, but raising these animals also produces an atmosphere-warming gas: … and archaea breaking down plant matter. So since 2010, the JGI has supported researchers studying those microbial … producing things like meat, milk, and wool. Hear more from JGI collaborators Sinead Leahy (New Zealand Agricultural …
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Jasmyn Pangilinan
… Jasmyn provides bioinformatics tools and analysis support for user science, … and collaboration, she works to develop and improve supporting pipeline efficiency through streamlined workflows, … reliability, thereby accelerating critical insights for the JGI User community. …
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Team Science Reveals Important Protein in Poplar
… Knockout experiments showcase potential for engineering bioenergy crops The Science Scientists at … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … to produce desirable traits.  Partly enabled by the JGI  Community Science Program New Investigator program , …
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Busting the Unbreakable Lignin
… of plant components   The Science There are three main ingredients to tackle when it comes to breaking down a … Research Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential genes responsible for lignin deconstruction. (The JGI also conducted RNA sequencing and alignment to the …
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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Inaugural Critical Minerals & Materials Joint Research Portfolio Announced
… Pictured from left: [Top row]: Romy Chakraborty, Dawn Chiniquy, Anne Glaesener, Steven Hallam, Marc Hanikenne, … 20 proposals were selected by the Joint Genome Institute (JGI) and the Molecular Foundry (TMF) for their collaborative … Biological and Environmental Research (BER) program, the JGI provides advanced genomic capabilities and access to …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Communications paper . The work was partly enabled by a JGI Community Science Program (CSP) proposal led by INRAE’s …
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SIPs with Standards
… Stable Isotope Probing (SIP) is a powerful technique for studying microbial … catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible … multiple teams and analyses. This episode, Rex Malmstrom (JGI), and Roli Wilhelm (Purdue University), share a few …
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A Complex Confection Decoded: Sugarcane Reference Genome
… genome and now crop researchers can work toward advancing sugarcane biotechnology. The Science Considered the … The Impact In providing a reference sugarcane  genome , the JGI provides foundational genetic information that crop … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. The sequences … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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