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… secondary users who made use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of … sequence We synthesized 9.7 Megabases of DNA We processed 13,700 metabolomics samples With our users, 247 publications … closed our 2018 Strategic Plan at the end of September, 2023 with over 90% of our two- and five-year milestones  …

… system’s immense collection of publicly accessible metagenomic datasets from a wide variety of ecosystems around … is here .) Working with the JGI, Banfield is a pioneer in metagenomic studies, recovering microbial genomes from biofilm … for Some Type V CRISPR-Cas Systems Mol Cell. 2020 Aug 6;79(3):416-424.e5. doi: 10.1016/j.molcel.2020.06.022. Wright AV …

… production. Also notable, researchers found it is missing 33 genes thought essential for photosynthesis, yet still … oil production. The organism uses specific chemical tags on DNA  to control which genes are active. Researchers … and Environmental Research program under award no. DE-SC0023027 (to SSM and JLM) with support from the Gordon and Betty …

… in 15 individual classrooms across the country, training 316 students in fungal biology, bioinformatics, and … (Module 2), Sample Collection and Processing (Module 3), Data Analysis in KBase (Module 4), and Conclusions and … supported by the JGI Director’s Science Program award #509937. SB was supported by the National Science Foundation …

… microbiomes. Scientists conducted a shotgun metagenomic survey on three types of conifers–limber pine, … of California (UC) Merced scientists conducted a shotgun metagenomic survey of conifer needle microbiomes across six … project in the JGI-UC Merced Internship Program. In 2023, Shayna Bennett, a UC Merced graduate student in Carolin …

… big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights the vast array of functional … (IMG/M) database, they successfully crafted the Novel Metagenome Protein Families (NMPF) Catalog.  “We can now … replicating a whole community is impossible.  Metagenomic sequencing allows researchers to study the entire …

… genomics and transcriptomics to discover another advantage these fungi wield: the capacity to form enzyme …

… Schadt, C., Martin, S., Carrell, A. et al. An integrated metagenomic, metabolomic and transcriptomic survey of Populus … genotypes and environments. 2024 Nature Sci Data. 11, 339. https://doi.org/10.1038/s41597-024-03069-7  p.eadg7888. … 2023 Fellow of the American Association for the Advancement of …

… Metagenomic datasets could help map out microbial diversity … biofuels and bioproducts, and medicine. Wading through 30 years of sequencing data, the team composed of Wu, … genes on nearly 2 million genomes, including isolates, metagenome-assembled genomes (MAGs) with varying quality …

… the auspices of the U.S. DOE under Contract DE-AC52-07NA27344. The work conducted by the U.S. Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported by …

… approaches. By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & … sequences.  Further analysis led to the identification of 328 “high quality” (based on completeness) diverse new … has extended the possible virophage genome size range from 13.8-29.3 kilobases (Kb) to 10.9-42.3 Kb. Additionally, the …

… some songbird W chromosomes — suggest that they are advantageous enough to have evolved multiple times independently. … by the National Natural Science Foundation of China (31590821, 31561123001, 31500502, 41871044), National Key Research and …