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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… next-generation feedstocks through CRISPR-edited poplars with optimized lignin, engineering heat-resilient algae for … enzymes discovered in extreme environments to engineered microbiomes that accelerate biomass processing. This year’s … Ecological Observatory Network (NEON) in collaboration with the National Microbiome Data Collaborative (NMDC) to …
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Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber
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Computationally Classifying Fungal Lifestyles
… fungi. The  work appeared in the June issue of  Studies in Mycology . This work was enabled in part through  … (blue) vs saprobes (green). (From Haridas S et al.  Studies in Mycology , 2020.) Using whole genome data from …
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2025 Progress Report
… expertise to support the global research community in studies of complex biological and environmental systems. We …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… plant fibers. The Science Walk in a temperate forest filled with Norway spruce trees, and microbial activity teems … in the form of greenhouse gases (e.g., carbon dioxide, methane, and nitrous oxide). Summary To do this work, the … and to which type of microbe they belonged. The team worked with the U.S. Department of Energy (DOE) Joint Genome …
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Frequently Asked Questions: Proposal Submission
… at any career stage. Generally, most users are able to work with Berkeley Lab.  However, users from certain countries … authorization from other U.S. government agencies to work with Berkeley Lab, a process which can take 6 months or longer to obtain with no guarantee of approval.    JGI staff are not eligible …
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Eelgrass Proves to Be Much Younger Than We Thought
… that figure is likely closer to a mere 250,000 years — with many key colonization events in the Atlantic ocean occurring within the last 40,000 years. The Impact Eelgrass represents … normally craft a genetic clock based on its divergence with a  different species. However, eelgrass didn’t have a …
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Three Join the JGI User Executive Committee
… is a staff scientist at PNNL and thrust lead on PNNL’s Soil Microbiome SFA. She serves as Secretary within the Microbial Ecology Section of the Ecological … She credits the JGI user programs as having been instrumental to her early career success, and is currently a PI …
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JGI on the 2020 Highly Cited Researchers List
… available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. Nikos Kyrpides and  Simon Roux … host plants to acquire nutrients. The papers appeared in  Studies in Mycology and in  Nature Communications , …
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Picking Up Threads of Cotton Genomics
… fields look like popcorn is literally growing on plants, with fluffy white bolls bursting out of the green pods in … years ago. Studying the cotton genomes provides breeders with insights on crop improvements at a genetic level, … biology and lead to higher yield and improved fiber while reducing input costs. Growers, the textile industry, and …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… book featuring polar bears in winter scenes that came with crayons in various shades of white. To researchers … most organism’s genetic information is encoded in DNA, with RNA delivering the instructions inside DNA to the cell, … together, learned from JGI’s Nikos Kyrpides that his Microbiome Data Science group was also working on RNA virus …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… for the JGI-UC Merced Internship Program was brimming with excitement and determination as they came onsite. From … to science communications, their schedules were filled with trainings that they later reported were incredibly … Genetic Elements and CRISPR Spacers in the Conifer Needle Microbiome Carlos Vazquez and mentor Bryce Foster, …
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