Search

… of California Santa Barbara. So plants don’t break down without a fight, but it’s an important battle to fine-tune. … the energy they store.      Since 2012, O’Malley has worked with the JGI to understand the enzymes these organisms use … a rumen sample, you’re going to find beautiful diversity.”  Within that diversity of bacteria and fungi, O’Malley and …

… species is made of four ecologically distinct groups with different lifestyles. The Science The bacterium SAR324 … out. The work on single cells was done in collaboration with scientists Tanja Woyke and Rex Malmstrom at the U.S. … chemicals instead of light. Boeuf pointed out that, without the JGI, the discoveries made in this project …

… to recover the genomes of these viruses and associate them with their microbial hosts. However, assembling viral … on one or both sides by genes from the host organism. With the virus-host boundary clearly defined using … in the viral genome versus those from the host organism. Without this prediction step, numerous genes for antibiotic …

… inside the host’s genome, living quietly and replicating with their host indefinitely. Now, in studying a microbial … strategy of lysogeny. The ability of the virus to tag along with the host has earned this strategy a riff, developed by … strategy makes sense in a terrestrial environment with low mobility. The metagenomic data suggests that …

Photobiont and fungus (mycobiont) live intertwined, with the photobiont transferring part of its … . To explore the genomes, Armaleo and colleagues worked with Igor Grigoriev, the Fungal & Algal Program lead at the …

… at Lawrence Berkeley National Laboratory, have collaborated with global researchers on projects related to understanding … of the JGI’s  Microbiome Data Science , leads one project with JGI colleagues Antonio Camargo and Simon Roux. Kyrpides … Program aims to better understand the viruses that coexist with humans – the “healthy” human virome - not just those …

… at Warp Drive Bio, and as a bioinformatics HPC consultant with NERSC. Dr. Udwary co-hosts JGI’s "Natural Prodcast" … (1996) … List available on Google Scholar … Education … Publications …

Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the Joint Genome … program, and on how plants coordinate their gene expression with light and temperature oscillations throughout the day. … of Cell Identity as an R package … Education … Selected Publications … Software …

… of non-model yeasts for production of biofuels and renewable chemicals, developing genome engineering tools for … sustainable and cost-effective biomass for production of renewable fuels and chemicals.  … Yasuo Yoshikuni is the DNA … … DNA Synthesis Science Program … Education … Selected Publications … Awards and Honors …

… at UC Berkeley and work in the pharmaceutical industry. He holds joint appointments as Fungal and Algal Program Head at … Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants.  Science, 2011; 332: … … Fungal & Algal Science Program … Education … Selected Publications … Awards and Service …

… positions at University of Florida and UCLA he has worked with a wide range of eukaryotic algae, archaea and bacteria … . 5: 1. 2020 Nguyen et. al., ManiNetCluster: a novel manifold learning approach to reveal the functional links between … Award for Research Excellence … Education … Selected Publications … Awards and Honors …

T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance computing and metabolite atlases. … 59(1), 33–42. Bowen, B., & Northen, T. (2010). Dealing with the unknown: metabolomics and metabolite atlases. … Google Scholar. … Education … Awards and Honors … Selected Publications …