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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address climate change: pulling atmospheric … biological activity of the surrounding neighborhood,” said Benjamin Cole, senior author of this work. Cole is a …
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JGI Hosts GPU Hackathon in May
… – links to training materials will be sent out. The main benefit is professional growth and development for the …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… Analysis of Metabolic Pathways in Fungal Pathogens Shayna Bennett and mentor Robert Bowers, Mobile Genetic Elements … Needle Microbiome Carlos Vazquez and mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein Bendall and mentor Juan C. Villada, Ecology & Evolution of …
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JGI Workshops at PAG
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Trent Northen
… 2024 Nature Sci Data. 11, 339. https://doi.org/10.1038/s41597-024-03069-7  p.eadg7888. DOI: 10.1126/sciadv.adg7888 Treen D, et al. … CL, et al. Anaerobic gut fungi are an untapped reservoir of natural products. Proceedings of the National Academy of …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… in the JGI-UC Merced Internship Program. In 2023, Shayna Bennett, a UC Merced graduate student in Carolin Frank’s lab … metagenomes. Learn more about her time at the JGI here . Bennett is applying the same experiment to a new … of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported by …
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John Vogel
… Communications 11 (1), 1-16  https://doi.org/10.1038/s41467-020-17302-5 Varoquaux, et. al.N. 2019 Transcriptomic analysis of … and metabolic responses. Proc. Natl. Acad. Sci. 116 (52) 27124-27132 Sasse, et. al.J. 2019 Multilab EcoFAB study shows …
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Pinning Down a Piece of Photosynthesis
… of genes, termed  The GreenCut2 Resource . It details 597 genes coding for proteins that are unique to … a similar region —  a domain of unknown function, DUF2470. In the world of proteins, a domain of unknown function … into focus. Blaby-Haas and her team hypothesized that DUF2470 was key to iron metabolism, and renamed it to Domain …
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Gene Expression: From On-Off Switch to Dial
… area in the DNA, to determine which targets might benefit from an intermediate level of expression. Similar to …
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Tracking the Origins of Methane-Producing Microbes
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… microbial lineages from a variety of environments. In 2017, the first New Lineages of Life (NeLLi) workshop was held, …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… year’s list features 6,849 individual researchers from 67 countries. Those from the JGI whose publications rank in …
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