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Waiting to Respire
… to ancestral bacteria’s energy sources. More than two billion years ago, cyanobacteria acquired the ability to produce … fellow Paula Matheus Carnevali was working with a group of metagenome-assembled genomes (MAGs) dubbed Margulisbacteria, … The research teams opted to collaborate on a single study, with Matheus Carnevali and Schulz sharing co-first …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
To boost crops more efficiently in the future, the evolutionary past may hold key insights. The way that plants … Facility located at Berkeley Lab. In addition to providing metagenome mining for computational analysis of the AT … around, regardless of malfunction or misplacement.  In studying this family of ATs, researchers found that these …
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Better Genome Editing for Bioenergy
… technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput … help scientists engineer organisms for bioenergy applications. Cas9 needs guide RNA to lead it to the correct sequence … I will spend the first four sharpening the axe.” In this study,  published in  Metabolic Engineering , a team of …
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Busting the Unbreakable Lignin
… shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main ingredients to … order to do so is a resource-intensive process. Now, a new study shows how anaerobic fungi — the kind living in the … and alignment to the reference fungal  genome . The study’s pivotal NMR (nuclear magnetic resonance) data, …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the … outline the questions they asked – and answered – in the study that recently appeared in the Proceedings of the … ecological and evolutionary consequences. A previous study conducted by our research team surveying the genomic …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
Program was brimming with excitement and determination as they came onsite. From data carpentry to science … Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant … Emerald Nash : What I’m working on here is an experimental study of root colonization by resident phages of a plant …
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Tracking the Origins of Methane-Producing Microbes
Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over half the total … were then sequenced separately. From these samples, 111 metagenome-assembled genomes (MAGs) were recovered, most of … is typically observed, but to the “TACK” superphylum,” said study first author Bojk Berghuis. “This provided us with …
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Pinning Down a Piece of Photosynthesis
By studying the structure and function of a cyanobacterial protein, researchers have new … insights into how these ocean photosynthesizers cycle carbon in changing conditions. The products of photosynthesis … scientist at the JGI and Molecular Foundry, and the study’s senior author. In other proteins, two histidine …
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Fishing for Novel Cellulose Degraders
… single-cell genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is … of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). Using a single-cell screen, … their functional roles in their community. This study shows how the function-driven, single-cell screen can …
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Toward More Efficient Artificial Photosynthesis
Chloroplast mimic a platform to capture and utilize carbon in a synthetic fixation cycle. The Science Chloroplasts are the factories in … can be further explored for novel functions. In the current study, the team combined the CETCH cycle with a …
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Tracing the Evolution of Shiitake Mushrooms
… genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and Antarctica. A  new analysis … the family tree for Lentinula. Within those samples, this study also tracks the enzymes these fungi use to break down …
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Marcel Huntemann
Marcel is in charge of several production pipelines (gene calling, functional annotation and methylomics) that run on microbial genomes and metagenomes. He also works on automating intra-department …
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