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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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Integrating Experimentation with Data
… Thanks for joining the Joint Genome Institute (JGI) and the Environmental Molecular Sciences Laboratory (EMSL) at their … Waterfront in Seattle, Washington.  Topics included:  Environmental Microbiomes Biodesign and Synthetic Biology … facilities dedicated to advancing research in bioenergy and environmental science. They provide the scientific community …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… kingdoms, including animals, plants, bacteria, archaea and fungi. We thought this kind of analysis would provide a … in South Korea as well as a faculty affiliate in the Environmental Genomics and Systems Biology Division of … each of six kingdoms: eubacteria, archaea, protist, plant, fungi and animal. This analysis led them to identify 2,938 …
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2022 Progress Report
… researchers to solve the world’s evolving energy and environmental challenges.   Mission  The mission of the JGI …
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The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… Grigoriev’s recent work includes the discovery of anaerobic fungi’s ability to break down lignin , the hardiest of plant … new genomes highlighting the diversity of white rot fungi in the genus Lentinula. Dan Rokhsar looked to the …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… in a bioremediation effort. The Science In 1999, the Environmental Protection Agency declared the North Railroad … to clean up a Superfund site. The Impact The Comprehensive Environmental Response, Compensation, and Liability Act … monitoring. The DOE has been similarly invested in environmental management, contributing to bioremediation …
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A User-Centered Approach to Accessing JGI Data
… data sets within groups, such as plants (via Phytozome) or fungi ( MycoCosm ). “We have made a concerted effort to … of DOE missions related to clean energy generation and environmental characterization and cleanup. The JGI provides …
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Ian Blaby
… reveals the impact of hydrogen peroxide on protein stress responses and overlap with other stress transcriptomes. The … thermophile from a mesophilic ancestor. Applied and environmental microbiology . 78: 1, 144-155. 2012 …
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Rex Malmstrom
… interactions in the hyphosphere of arbuscular mycorrhizal fungi. Microbiome 199 Needham, D.M. et al. 2019. A distinct …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users … production. These efforts support the DOE’s Biological and Environmental Research program’s efforts in advancing …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… assembler that supports “an unprecedented assembly of environmental microbiomes.” JGI’s Chief Informatics Officer  … forward and to assemble, for the first time these large environmental  microbial data sets for JGI users, which … of DOE missions related to clean energy generation and environmental characterization and cleanup. The JGI provides …
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