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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… of quantity and thickness. Replacing older, thicker ice with younger, thinner ice means more fresh water — and less … yield and climate resilience of algae — for potential use as biomass or in biomass conversion to biofuel. Summary … First Research Excellence Fund to Sentinelle Nord is acknowledged. Additional support was by way of the Fonds de …
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Jeremy Schmutz
… years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community driven science for … Plant Science Program Head at the JGI. Click to learn more about the program's areas of focus, major initiatives and … et al. 2017. Sparse panicle1 is required for inflorescence development in Setaria viridis and maize. Nature Plants …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
With a new methodology, scientists are now getting more … Studying the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but … To access the genomes of uncultured  microbes , scientists usually employ two different methods; shotgun metagenomic …
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A Natural Mechanism Can Turbocharge Viral Evolution
The Science The first step in the deadly dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” morphology, this means using proteins on … Department of Energy under award DE-SC0020173. M.A.O. acknowledges funding support from the National Science Foundation …
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Honey Bee Gut Microbiota Divvy Up Dinner
… two polysaccharides can yield sugar monomers, it’s only with the aid of specialized bacterial enzymes. Honey bees … of the National Academy of Sciences . The team focused on the dominant bacterial clades shared between honey … pollen’s pectin and hemicellulose are degraded mainly by just two clades:  Gilliamella,  which mostly resides in the …
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Accelerating Metagenomics Discoveries with Deep Learning
Lab) and other institutions shared their works-in-progress with 86 participants in an online workshop to harness deep … workshop, Volkan Sevim, a computational biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), … that low sequence identity may belie. The technology he’s using is magical; transform any length of amino acid …
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Busting the Unbreakable Lignin
The Impact Traditional methods for breaking down biomass use aerobic methods (those using oxygen) to remove lignin … anaerobic fungi could be used to effectively modify lignin without oxygen and make use of it, it would change the … that aerobic fungi, like mushrooms, have some ability to slowly break down lignin (think of a fallen, decomposing tree …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… boggy wetlands produces an estimated 5% of annual greenhouse gas emissions. Understanding how sphagnum, a primary … their role as carbon sources. Summary Sphagnum, a genus of just under 400 mosses that can carry up to 25 times … plants don’t fully decompose in peatlands, and so carbon within their tissues doesn’t return to the atmosphere. Peat …
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Streamlining Regulon Identification in Bacteria
… technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of … sigma factors that initiate transcription in bacteria. Using this technology, which combines an in vitro … coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions is part of the …
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Training the Next Generation of Talent
Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, Keedrian Olmstead was back on campus at the … JGI researcher, Zhong Wang, have adjunct faculty positions with the SNS, and Wang’s group was hosting another QSB … very well, sending it out to companies. I’ll take that knowledge back with me.” Now a second-year evolutionary biology …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also holds a joint appointment with … the genetic codes of plants is often challenging because in many plants chromosomes are present in more than two … an early algorithm and developing it in order to talk about the subgenome identity.”  These days, Session is …
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Marine Microbe Contains Multitudes
… species is made of four ecologically distinct groups with different lifestyles. The Science The bacterium SAR324 is unusually cosmopolitan. In the ocean’s North Pacific … surface, to the blue-lit twilight zone, to the continuous pressure of the dark abyss, 4000 m (2.5 miles) deep. …
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