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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a close look at more ecosystems and organisms than … computing infrastructure and analysis. This way, JGI users — both primary, data-generating users, as well as …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery from metagenomes. The Science Through the … The work aligns with the ETOP mission of providing JGI users with the most current technology and expertise in …
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in Florida to discuss a JGI pilot project involving soil sampling in … Joint Genome Institute (JGI) , a DOE Office of Science User Facility. She took special interest in it because she …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made … at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported under contract number …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse gas 20 … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly available metagenome data …
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Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data
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MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources
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Examining the cause of high inbreeding depression: analysis of whole‐genome sequence data in 28 selfed progeny of Eucalyptus grandis
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A Sorghum Pangenome Opens More Doors to Discovery
… sorghum varieties, a resource for breeders and researchers to harness the traits that let this biomass powerhouse … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Research (BER) program to apply systems biology approaches to plants relevant to national energy priorities. …
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Cataloging the Microbes that Manage the Health of River Systems
… United States. They also provided multiple access points to the information. The team harnessed a community-science … systems, these communities remain understudied. Through the JGI’s Community Science Program, Colorado State University … not only how researchers can successfully partner with DOE user facilities and resources on such large-scale multi-omic …
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Soil virus offers insight into maintaining microorganisms
… portal, researchers have identified a virus protein tied to carbon cycling.  The Science Through a collaborative … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Sciences Laboratory (EMSL), which are DOE Office of Science User Facilities. Both facilities are sponsored by the …
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Learning to Look
… Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” readers need to … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an algorithm that a computer could … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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