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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… Novel archaeal lineage found in Yellowstone may have been … early Earth conditions. The Science Through a combination of sequencing tools and techniques applied to samples … archaeal lineages, the team relied on a combination of phylogenomic analyses, transcriptomics for microbial genomic …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex … bacterial clades shared between honey bee and bumblebee gut microbiomes. Researchers found that pollen’s pectin and … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome Analysis group. In this role he supervises … as a research scientist on projects to develop functional genomic technologies and to understand genome function in … BS in Biochemistry and Biological Chemistry, Nottingham University, UK PhD in …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and … characterized at UC Berkeley and the Innovative Genomics Institute.  The Science Researchers report the discovery of miniature Clustered Regularly Interspaced Short … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… By characterizing the structure and function of a methylthio-alkane … more.  Microbes excel at recycling the abundant miscellanea of their surroundings. Case in point: for us, the smell of … The U.S. Department of Energy Joint Genome Institute, a DOE Office of … Berkeley National Laboratory, is committed to advancing genomics in support of DOE Office of Science Biological and …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, … his doctoral research in synthetic biology and microfluidics at the University of California, San Diego. As the … team responsible for piloting and operationalizing new genomic technologies, integrating automated liquid handling …
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Better Genome Editing for Bioenergy
… A team has optimized a crucial part of CRISPR-Cas9 technology to … tool will make the right cut, researchers created a set of guide RNAs that were effective against 94 percent of the … This work was supported by DOE Joint Genome Institute grant  CSP-503076 … MB) and NSF  1706545 (IW). HA and JW were supported by the Office of Naval Research under grant  N00014-15-1-2785 . JW …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… This is excerpted from the full announcement “ Berkeley Lab Receives Multiple 2021 HPCwire … Choice Awards . NERSC, JGI, ESnet are U.S. Department of Energy Office of Science user facilities. The HPCwire … that supports “an unprecedented assembly of environmental microbiomes.” JGI’s Chief Informatics Officer  Kjiersten …
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The Genome Portal of the Department of Energy Joint Genome Institute
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The Phaeodactylum genome reveals the evolutionary history of diatom genomes
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An Automated Tool for Assessing Virus Data Quality
… CheckV can help researchers assess virus sequence fragments and data … (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … database that is part of the Integrated Microbial Genomes & Microbiomes (IMG/M) suite, as well as sequences from the …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… Though visible to the naked eye, microscopy reveals unexpected complexity At first … the slightly murky waters in the tube look like a scoop of stormwater, complete with leaves, debris, and even … Université des Antilles, described the morphological and genomic features of this giant filamentous bacterium, along …
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