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Dan Rokhsar
… Publications … Chair, Computational Biology, UC Berkeley 2012 Cotton Biotechnology Award, National Cotton Council 2009 Friday … Selected Publications …
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Boosting Small Molecule Production in Super “Soup”
… products at volumetric productivities greater than the source strains. (Blake Rasor) Think of cells as tiny … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … said. “We’re exploring not just what can be enabled by this technology, but also what we can understand through this …
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JGI on the 2020 Highly Cited Researchers List
… in the top 1% by citations for field and year in the Web of Science.” Less than 6,200 researchers working in 21 fields … sequence of green millet ( Setaria viridis ) in  Nature Biotechnology.  The work also led researchers to identify a … for  M. sinensis can both inform and benefit from breeding programs of related candidate bioenergy feedstock crops such …
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Triggering Morel Fruiting
… led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis Martin from the … is triggered when nutrients are acquired from an external source.  The work is part of the JGI’s 1000 Fungal Genomes … by the black morel, as well as the gene-expression programs encoding the biochemical processes unveiled by …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … sets for the Loxahatchee Refuge,  was published in the journal  Environmental Microbiome . “Before JGI was involved, …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to living on … Day on April 25. Since both DNA and the Earth are close to our JGI hearts, we’re featuring some scintillating genomic …
Learn more
Green Algae Reveal One mRNA Encodes Many Proteins
… reported in the Proceedings of the National Academy of Sciences , a team of researchers has found numerous examples … zofingiensis . “I was scrutinizing the genes of one of our species of algae and kept seeing what looked like … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Berkeley Lab and the …
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2025 Progress Report
… JGI researchers demonstrate how their laboratory and data science efforts support users, advance foundational science and enable biotechnology discoveries. (Pictured from left to right: Peng … complex biological and environmental systems. We optimize our service to the community through responsibly managing …
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JGI-KBase Panel at SACNAS
… scientific contribution they make, whether as part of a course or internship, and before ever publishing a research … of Energy-funded National Labs, User Facilities and Programs, and introduce best practices for anyone to get credit for their contributions to science. A panel of DOE researchers, program managers, and …
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2025 NeLLi Symposium
… in the areas of bioenergy and biomedicine, as well as biotechnology. … to ensure accurate headcounts. * Optional Dinner and Tour of The Mob Museum on Nov. 5 This optional event includes dinner, distillery tasting, and tours of the Mob Museum and Fremont Street Experience. It …
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New and Improved: Eucalyptus Reference is Now Accessible
… to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with significant … for eucalyptus in various industries, having genomic resources to develop molecular breeding tools has been …
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Sequencing Submission Requirements for DNA Synthesis
… Annotated GenBank File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an open source desktop application written by M. Wayne Davis or … How To Use ApE To save your ApE file as a Genbank file, simply go to File -> Save As …
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