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Better Genome Editing for Bioenergy
… of the genes in a lipid-prolific yeast. The Impact The team used this set of guide RNAs on  Yarrowia lipolytica to … furthers the U.S. Department of Energy’s goal of producing sustainable fuels from alternative sources. Moreover, the … essential to  Y. lipolytica . They identified 1,377, or 17.5 percent, of  Y. lipolytica ’s genes to be required for …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… in mammals: a structure that helps correct deleterious mutations. The Impact Shrub willow and its close relative  Populus trichocarpa,  or the poplar tree, are potential biofuel … willow is flipped: females are heterogametic. To avoid confusion with the mammalian system, the sex chromosomes are …
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Training the Next Generation of Talent
… Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, Keedrian Olmstead was back on campus at the University of California, Merced to start … instructions for building and maintaining cells through the use of deep-sequencing technologies. The internship program …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
… are solicited annually for the summer term (May through August) and selected projects will receive stipend and travel …
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Igor Grigoriev
… training at UC Berkeley and work in the pharmaceutical industry. He holds joint appointments as Fungal and Algal … the JGI Fungal Genomics program which resulted in over 2500 fungal genomes in the JGI MycoCosm portal. In 2018, he … geomics and PhycoCosm portal. Dr. Grigoriev engaged thousands of researchers in genome projects and organized …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … version of the genome is assembled into sequences of 5.5 million basepair (bp) in length, while the previous …
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its … and a part of the oil-producing Mucoromycotina group, about which little is known. The Cornell team cultivated and … DOE JGI team sequenced and annotated a host genome (Rm ATCC 52813) as part of the 1000 Fungal Genomes project. As …
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JGI announces 2025 Functional Genomics awardees
… from left: [Above] Hao Chen, Matthew Cope-Arguello, Theophilus Olufemi Isimikalu, Todd H. Oakley, BJ Philmus and Aaron M. Roshotte; [Below] Paul Scesa, Kathleen … Below find a list of the 11 researchers accepted for 2025.  Proposals are accepted year-round ; the next deadline is …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… now available to the global research community able to not just analyze but also create DNA sequences mimicking an array … sequences based on the principles it learns from the data about genetic structure — carrying with it the potential … You’d go find the cash converter box, feed it a $1, $5 or $10 bill and receive a set amount of tokens, …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… achievements in science, technology, and diversity/inclusion by the annual  HPCwire Readers’ and Editors’ Choice … JGI, ESnet are U.S. Department of Energy Office of Science user facilities. The HPCwire Editors Choice Award for Best Use of HPC in Life Sciences went to the Berkeley Lab team …
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Ben Bowen
… in mass spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and … supporting the DOE’s Biological and Environmental Research user community in their bioenergy and environmental … UC Berkeley, Leadership and Development Program Awardee 2005-2009: NIH K25 Mentored Career Development awardee …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … cow stomach. Rumen – and its microbes – are really a powerhouse. Rumen microbes have the ability to break down hardy … expanded into three other universities. You can learn more about how JGI data supports higher education in this JGIota …
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