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A Natural Mechanism Can Turbocharge Viral Evolution
Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing … membrane. Two decades ago, a team discovered a group of viruses that had in their genomes a surprising tool: a … uncover these DGRs. DGRs were found in single microbial and viral genomes, as well as genomes sampled all at once from …
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Natural Prodcast Episode 6: Marc Chevrette
… … DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … of maybe a different career trajectory than we sometimes see… MARC: Yeah, I’m a little weird? DAN: Yeah. So … what they were doing in these genomes and how they change over time. And yeah, I mean, that was let’s see, maybe 5,6,7 …
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Partnerships: Adopt-A-Genome
… work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of Energy Joint Genome Institute, builds upon thousands of … per student) Seven student-drafted articles accepted with over 20 more in draft Efforts in ongoing curriculum …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and … M. sinensis genome analysis explains the hybrid origin of giant miscanthus ( M. x giganteus ), a high-yield candidate … as its name suggests giant miscanthus literally towers over most researchers due to its prodigious capability for …
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Unravelling viral ecology and evolution over 20 years in a freshwater lake
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JGI Portals
… constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial … the largest publicly available collection of Uncultivated Viral Genomes, derived from genomes, metagenomes, and metatranscriptomes. It features over 15 million viral genomes and fragments, enriched with …
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Viral niche-partitioning: Comparative genomics of giant viruses across environmental gradients in a High Arctic freshwater-saltwater lake
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Natural Prodcast Episode 9: Roger Linington
… … DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger … Institution of Oceanography. Roger was splitting his time between Bill Gerwick’s lab and doing research in Panama … Gerwick as part of the International Biodiversity Drug Discovery consortium doing natural products isolation/structure …
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An Automated Tool for Assessing Virus Data Quality
… (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … and best practices for characterizing uncultivated viruses. Following up on those guidelines, JGI researchers … assess and improve the quality of metagenome-assembled viral genomes . The Impact The microbes that play key roles …
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Synthesis
… and novel automations for DNA design, assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables … CRISPR gRNA design tool  … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, …
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Genome Insider
Genome Insider is a podcast that showcases the work of JGI collaborators in brief forays, connecting audiences … encoded in plants, fungi, microalgae, environmental viruses, and bacteria to contribute to a more sustainable …
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Natural Prodcast Episode 2: The Primer, Part 2
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … of the field today. So, not as much of a preamble this time. Let’s jump right in. — DAN: So secondary metabolites. … a little bit more giving. DAN: Alright, so I think we’ve covered a little bit about why they’re important. But one of …
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