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Natural Prodcast Episode 10: A Primer on Genome Mining
… in order to challenge or kill off competition, right? And plants do the same sorts of things. And then, bacteria often live in symbiosis with plants and might actually be producing molecules that are … lots of stuff. On average, we had something– I think we had two biosynthetic clusters per MAG, which is pretty good …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… the shared genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , … plant lineages. The team found that some of the adaptation strategies used by liverwort are also seen in flowering … and flowering plants had adapted to their environments, two gene families—peroxidases and nucleotide-binding …
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FICUS
… utilize a broad range of the capabilities across at least two of the facilities, and generate datasets beyond what … JGI and EMSL Omics Tools introduces the NEON resource, a network of field research sites designed to collect long-term … the spatial, temporal, taxonomic (environmental, microbial, plants, invertebrate, and vertebrate), and thematic scope of …
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Natural Prodcast Episode 15: Katherine Duncan
… about Antarctica, and we want to talk about molecular networking, because I really enjoyed the review that you wrote … published a lot in what I guess I would call molecular networking. You know, we should probably grab Pieter … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …
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Secondary Metabolites Program
… of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which are not essential for … platforms, tools and data for deciphering regulatory networks, and refining experimental approaches to explore the … and  Streptomyces lysate systems. Deciphering regulatory networks of secondary metabolite biosynthesis: We have …
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DNA Synthesis Program
… decomposition, CO2 fixation, redox reactions, and plant metabolite biosynthesis, synthesizing and … of fungi and community annotation. … Phytozome is the JGI's Plant Comparative Genomics portal. Families of related genes …
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Natural Prodcast Episode 2: The Primer, Part 2
… and ergot alkaloids come from fungi, and Taxol from plants. Plants, fungi, bacteria, archaea, they all have secondary … the Frankia are bacteria that live in the root nodules of plants. And these guys were sequenced, and you can see that …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with … their genomes. In their base state, they are diploids with two genome copies, one from each parent. Having three or … found in a species, but in this case, the team included two species in the pan-genome . Typically, pan-genomes are …
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Ancient Algae Reveal Secrets of Plant Evolution
Research uncovers the genetic foundations that helped plants conquer land over 600 million years ago. The Science … agriculture and clean energy. These evolutionary strategies that helped plants thrive under challenging … are interconnected, suggesting that this genetic network was already in place in ancient algae. Essentially, …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… at the University of Illinois at Urbana-Champaign. I had a two body problem, and it was a really great opportunity to … are unknown. And so we've done the sequence similallity network analysis where we look for other receptors with … next year. And then, probably, it'll take another year or two to get all the screening done with the molecules and the …
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Natural Prodcast Episode 1: The Primer, Part 1
… the special, natural chemical compounds that you find in plants, fungi and bacteria, basically all living things. … eventually they figured out that they could culture the plant cells and produce enough that way in really large like … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …
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Cyanobacterial-based approaches to improving photosynthesis in plants
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