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Secondary Metabolites Program
… not essential for fundamental growth, provide critical advantages to the organisms producing them, and are often …
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What Happens To a Rainforest When You Dial Up Drought?
… happens to that storage when a rainforest hits a drought. Tag along with their experiments in a fully enclosed, …
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Microbiome Data Science Team
… hosts (Nature 2016, Science 2017, Nature Microbiology 2018), discovery of new genes with important biotechnological … CRISPR-Cas types) (Nature Communications 2017, Science 2018, Molecular Cell 2019) and massive reconstruction of … Unraveling the functional dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. … Along with highlighting the viruses in a given sample, metagenomics shed light on another key aspect of viruses in … from different ecosystems all over the world, including 3,908 isolate reference DNA viruses and 264,413 computationally …
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DAS Tool for Genome Reconstruction from Metagenomes
… validating an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging … them to reconstruct more near-complete genomes from soil metagenomes compared to other methods. The Impact … changes. Summary Researchers have been utilizing metagenomics as a way to study a collection of …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… mats are wildly prevalent, containing an estimated 40 to 80 percent of all the microbial cells on Earth. As microbial … a more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, … the virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for …
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Webinar: MycoCosm Tutorial
… there a tool in this platform to search fungal genomes in metagenomes? A: Search in metagenomes is available from … but we are open to a dialogue about a possible rationale. 8.  Q: Is there any way to get the most recent tree deployed … A: Absolutely! 12.  Q: Is it possible to use the Browse page tool to compare your own data with the JGI database? A: …
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New and Improved: Eucalyptus Reference is Now Accessible
… tree, had a gene annotation completement level of 93.8%. The 2025 assembly has a gene annotation completement … The work (proposal: 10.46936/10.25585/60008105, WIP proposal ID: 508017, Myburg, Wegrzyn, Borevitz) … E. grandis TAG0014 HAP1 and HAP2 genomes (2025 assemblies) …
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Protocols
… iTag protocols: …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… a paper in the journal Science. It detailed how they’d used metagenomics — a then-novel approach which allows scientists …
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Tapping the treasure trove of atypical phages
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… to  Euryarchaeota .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to sample the entirety of a microbial community …
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