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FICUS
… The Facilities Integrating Collaborations for User Science … for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … Successful applications will focus on high-risk/high-payoff proposals within the focused topic areas that can be …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature … microbial resource that provides information at multiple scales from genes to the community level. The Impact Rivers … information was also generated. The 3.8 trillion bases or Terabases of sequencing data, along with geochemical and …
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Natural Prodcast Episode 18: A CSP Primer
… while, but Natural Prodcast is back again for another round of episodes. If you stick around for the next few months, … a new investigator who wants to try out something smaller scale, or if you’re just curious to know more, then I really … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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FICUS Overview
… The Facilities Integrating Collaborations for User Science … to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National User Facilities into … provides customized analysis, the JGI also participates in publication of results. …
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a virus protein tied … effort, researchers have identified a protein in soil viruses that may promote soil health. The work was enabled in part by a community data portal of the U.S. Department of Energy (DOE) Joint Genome …
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User Support Analysis Group
… The User Support Analysis group provides computational analysis for new … epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product … pipelines for standard sequencing products performed at scale. Our group also performs ‘proof-of principle’ research …
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Reference-free structural variant detection in microbiomes via long-read co-assembly graphs.
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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint … products because they’re easy to find. They grow in the soil. These are the same guys that produce geosmin. And so … Episode Transcript … This the second episode of Natural Prodcast, which continues a conversation from the …
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Understanding Wildfire Recovery, Starting in Soil
… A metagenomic look at the soil microbes present a year after a wildfire. The Science … begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, … Sciences Laboratory (proposal ID 49615), which is a DOE Office of Science User Facility. This facility is sponsored …
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Natural Prodcast Episode 19: Bill Fenical
… DAN UDWARY: Hey, everyone. I’ve got a great episode for you here today. We got the opportunity to talk to one of the real legends of natural products, Professor Bill … Salinispora tropica , for example, is only found in the tropical Atlantic. Why that should be is a microbiological …
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Natural Prodcast Episode 8: Eric Schmidt
… DAN: You’re listening to the US Department of Energy Joint … rich and underappreciated. And we’ve worked both with the microbiome. So, with symbiotic bacteria that live in animals … Episode Transcript … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …
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Plant Microbial Interactions Group
… Plants are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … and are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, … fungi, viruses. Resident viruses can be found in a myriad of bacterial strains, whereby they can modulate host …
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