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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, … critical requirements for amplifying the JGI’s impact. Data generated from a single investment will be reused for …
Learn more
Natural Prodcast Episode 24: Jackie Winter and SMC
… bit more into fungi and learning the differences of all the genetic differences and then expanded on on that knowledge … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever … million BGCs in the database on the release, and that’s the bacterial stuff. Could be more. [CHUCKLES] I’m not quite …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or harm plant host … plant-associated fungi. Their analysis identified fungal gene families that help determine if these fungi act as … The sequencing project was funded by the U.S. Department of Energy …
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Natural Prodcast Episode 15: Katherine Duncan
… Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today we’re going to talk to Kate Duncan. And Kate is– I should ask, you … I was imagining some massive contraption for amplifying genes. I wasn’t really sure what actinobacteria were. Dan … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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Natural Prodcast Episode 6: Marc Chevrette
… DAN: You’re listening to the US. .Department of Energy Joint Genome … that can’t live without their host. They have no extra genes hanging around, they still dedicate 20-30% of their … of the opinion that on the geological timescale, that most bacterial natural product systems evolved, you know, a …
Learn more
FICUS
… The Facilities Integrating Collaborations for User Science (FICUS) call … the capabilities across at least two of the facilities, and generate datasets beyond what each of these facilities could … provides customized analysis, the JGI also participates in publication of results. …
Learn more
Partners
… The JGI leverages its existing partnerships and develops others providing complementary … with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further leveraging the services of the … DOE Systems Biology Knowledgebase (KBase) and the National Microbiome Data Collaborative (NMDC)—to provide access to …
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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … through the stories I told you about geosmin, which is a bacterial sacred metabolite, and ergot alkaloids come from … that produces those. So it’s not a hard and fast rule, but, generally, animals do not have secondary metabolism that we …
Learn more
Project Management Office
… to onboard users and guide them through the process of working with our facility. This includes help with: preparing a Statement of Work, completing a formal User Agreement, … Please review our FAQ in advance of contacting the PMO office.  … Before work can start on any approved proposal – including the submission of samples for sequencing, or the …
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CSP Large Scale Call
… focused on genomic science projects that address biological functions for biomanufacturing, critical minerals and materials, inter-organismal interactions, and … For the CSP Large Scale call, a Letter of Intent (LOI) is required by the due date printed below. …
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Natural Prodcast Episode 18: A CSP Primer
… UDWARY: It’s been a while, but Natural Prodcast is back again for another round of episodes. If you stick around for … I think for Natural Prodcast, I think the question that generally comes up that people come to me asking like is– … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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Data Policy
… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It … of certain types of data to support their use by those generating data. The JGI Data Policy applies to research … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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