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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity hotspots Over the past few decades, … the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We … microbes, hosts, and their environments could be applied to multiple research areas including agriculture, biofuels and …
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Natural Prodcast Episode 14: Nigel Mouncey
… … DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot … I did my undergraduate in microbiology and then PhD in microbial genetics in the UK. And came across to the US for … A few examples of those are obviously expanding the diversity of known secondary metabolites and their …
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How to Submit Sequencing Samples
… of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on … at the JGI. The quality of the starting material is one of the greatest predictors of a successful sequencing …
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Secondary Metabolites Program
… algae and plants. These molecules, which are not essential for fundamental growth, provide critical advantages to the … program aims to tap into the largely unexplored biochemical diversity within secondary metabolites, expanding their … factors and determine their binding sites across multiple genomes. Computational prediction of heterologous …
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Publication Policy
The JGI has a strong interest in seeing that the data produced by the facility … and collaborators have the right to produce manuscripts for publication and the responsibility for leading the … navigate to the proposal info page using any of the below methods: Search the Genome Portal Navigate to the JGI Genome …
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Natural Prodcast Episode 2: The Primer, Part 2
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … so secondary metabolism is throughout nature, except maybe for animals and humans, not as much. You know, we have this … derivatives of natural products.  ALISON: Like such a large diversity can have similar effects, I think is also really …
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Natural Prodcast Episode 5: Brad Moore
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … and SIO. Oh, I should say what those are. Brad: What’s SIO, for all those listeners out there? Dan: Scripps Institution … what happens. Dan: Very cool. Well, the word you’ve used multiple times today is fun. And I know, from working with …
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CSP Large Scale Call
… to unravel functional capabilities of plants, microbes and microbial communities, global carbon and nutrient cycling, … emphasis that are listed in the call and leverage the diversity of JGI technical and analytical capabilities. All proposals will be externally peer-reviewed for scientific merit, DOE mission relevance, proposed data …
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Natural Prodcast Episode 22: Alison Narayan
Hey everyone. Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society for Industrial Microbiology and Biotechnology (SIMB) Natural … made it onto our list is because we wanted to have diversity. And so we wanted a profile across that protein …
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The Power of One, Amplified
… by collecting nearly 500 single cells from a single low diversity hot spring sediment sample. Their work showed that … approaches including amplicon and metagenomic sequencing. For example, they showed that the composition of the … of bioinformatics tools for  extracting snippets of microbial genomes directly from environmental sequence data, …
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Data Policy
… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and information sharing. We also recognize the need to have a … use-restricted data. JGI proposals typically include multiple projects of different types which can span several …
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Synthesis
The Joint Genome Institute's DNA Synthesis Platform capabilities … for assembly by Gibson, Yeast recombination and Golden Gate methods … gRNA-SeqRET … BOOST … Synthesis Platform Lead … …
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