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High‐resolution phenotyping of sorghum genotypic and phenotypic responses to low nitrogen and synthetic microbial communities
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A Natural Mechanism Can Turbocharge Viral Evolution
… how a fundamental mechanism of evolution allows microbes to adapt to changing environments. The Science The first step in the deadly dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” … uncover these DGRs. DGRs were found in single microbial and viral genomes, as well as genomes sampled all at once from …
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Natural Prodcast Episode 3: The Primer, Part 3
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … DAN: Hey there. This is Dan again, and you’re about to listen to the 3rd and final part of Natural Prodcast’s … starting to decline around the 70s. It’s really very, very low these days. So maybe one or two or three natural product …
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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … recorded at the SIMB Natural Products conference, which took place last January 2020 in San Diego. San Diego, of … I mean, what made you want to work in natural products following him? I know a lot of people sort of veer off and go …
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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … DAN: Hi, again. This is Dan, and you’re listening to the second episode of the Natural Prodcast. This is part … of a colony. This is a zoomed in photo of a really blown up colony of Streptomyces.  ALISON: It’s wild. It kind …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of … in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … genomes in the public domain, the bulk of which belong to only three phyla. The Woyke group uses single-cell …
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural … those two years? So that’s the new model that we’re now following. And I think proposed it at a moment, and I think … IMG kind of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial …
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Industry Engagement Program
… than 2,500 users that predominately come from the public sector: academic and government institutions — with … largely unknown and underutilized by industry. When Director Nigel Mouncey joined the JGI in 2017, he brought with … high-value partnerships among members that catalyze data flows and promote novel data applications. As a large-scale …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… that showcase our collaborations and capabilities to enable great science that will help solve energy and … challenges. In 2009, researchers at the JGI and the Bigelow Laboratory for Ocean Sciences described a novel … and offered a way for researchers to study the planet’s microbial diversity, much of which remains unknown and …
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Constraining the oxygen requirements for modern microbial eukaryote diversity
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Natural Prodcast Episode 24: Jackie Winter and SMC
… DAN UDWARY: Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A … are familiar with JGI’s IMG data portal , the Integrated Microbial Genomics, there was a subsection of that called … genome right now. But eventually, it will be– it could be a viral sequence. It could be a contig. It could be whatever …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI researchers Lee Call,  … journal  Annual Review of Biomedical Data Science . The following guest piece was written by Call, a postdoctoral fellow in the JGI Microbiome Data Science Group led by …
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