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Environmental Genomics Group
… e01280-22. 10.1128/msystems.01280-22 Clum, A. et al. (2021)  DOE JGI metagenome workflow …
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Partnerships Development Team
… industry engagement through three primary routes:  … The CSP provides the scientific community at large with access …
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Products
Program leads to discuss available options. Note: In 2021, we conducted an extensive internal product audit to … assembly), DGE, alignment files 91/126 Metabolomics Polar metabolite analysis Relative abundance profiling of polar (e.g. amino acids, nucleosides, etc) metabolites using normal phase chromatography coupled to …
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Natural Prodcast Episode 2: The Primer, Part 2
… this time. Let’s jump right in. — DAN: So secondary metabolites. I kind of inferred through the stories I told you about geosmin, which is a bacterial sacred metabolite, and ergot alkaloids come from … ALISON: Like such a large diversity can have similar effects, I think is also really interesting. Because …
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User Advisory Committees
… … Prokaryote Programs User Advisory Committee … Secondary Metabolites User Advisory Committee …
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Partnerships: Adopt-A-Genome
… sequence to biological inference. … Genome sequences of key bacterial symbionts of entomopathogenic nematodes: …
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Natural Prodcast Episode 20: Brian Bachmann
… of years and relatively stable– no lights, constant temperature, constant humidity. And they were– so they were … terms of what we’re doing with the JGI with the Secondary Metabolites Collaboratory and trying to have a good catalog … could be called semisynthesis. So you can knock out an acyltransferase and then use a free hydroxyl group and do some …
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New Lineages of Life Group
… is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in … 1-9 Schulz et al. (2017) Towards a balanced view of the bacterial tree of life. Microbiome. 5 (1), 1-6 Schulz et al. … 18 (8), 2326-2342 Schulz and Horn (2015) Intranuclear bacteria: inside the cellular control center of eukaryotes. …
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Scientific Advisory Committee
… at the JGI; and overview of the Community Science Program (CSP). A crucial job of the committee is to take the input from the CSP Proposal Study Panel on prioritization of CSP projects and, with concurrence from the DOE Office of …
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Natural Prodcast Episode 17: Cassandra Quave
… a check-up on me. And I wonder how that intersects with bacterial bioprospecting that is often done, where we’re … one thing we do see is that generally, the major secondary metabolites are there, they just are going to be there in … And we looked at both the chemistry and the pharmacological effects against bacteria.  And what was interesting is that …
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FICUS
… on an accelerated timeline as compared with the standard CSP projects. In addition, they must utilize a broad range … such as DNA-SIP, Protein SIP, Flux Balance analysis with metabolites, Isotope Ratio Mass Spectrometry, NanoSIMS, and …
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Community Science Program
The Community Science Program (CSP) provides the scientific community at large with access … of disciplines. Three calls fall under the umbrella of our CSP: The Large Scale call is for expansive projects that …
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