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… Collaboratory encourages user engagement. The Science In addition to the core set of "primary … and secondary metabolites information from isolate and metagenome data.   The SMC ( smc.jgi.doe.gov ) is designed … Expansion of the SMC to include fungal, plant, viral, and metagenome data is currently underway. …

… This year’s list features 6,900 researchers working in 21 fields.  Congratulations to the  2022 Highly Cited … doing in the Guadeloupean mangroves where it was found. The study was featured on the  New York Times 2022 List of … Woyke  was also one of three authors on a recent study that made the cover of  Nature Reviews Microbiology ,  …

… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, … being recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … The work was led by research scientist Stephen Nayfach, the study’s first author in the Microbiome Data Science group …

… In a special issue of mSystems , out May 14, 2019, JGI … article, Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more … and experimental approaches with the aim of eventually studying virus-host dynamics in nature. In the last few …

… Trained on environmental data, a new JGI tool more accurately … existing methodologies developed for natural languages to study genomes,” Wang explained.  And since microbial genomes … Lab’s Computing Sciences Area to develop an efficient metagenome assembler capable of assembling many terabases of …

… Laboratory (Berkeley Lab) hosted a pitch event promoting fully-supported summer research collaborations through the U.S. Department of Energy (DOE)’s Visiting Faculty Program (VFP) . The VFP is a summer professional … were: Simon Roux and Matthew Kellom for the JGI Metagenome Program Ellen Dow and Elisha Wood-Charlson for …

… A deep dive into microbial genomics reveals one bacterial species is … SAR324 exist in so many varied environments? Now, a recent study published in Microbiome has uncovered that SAR324 … sequenced community genomes and expressed gene transcripts (metagenomes, metatranscriptomes), as well as the genomes of …

… Highlighting the latest interactive version of the JGI’s plant data portal. On … current, and only, version of Phytozome accessible as an interactive website. Since May 2019, v12 has not had any … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …

… Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … data were generated, bioinformatic tools for binning metagenome data involved with mainly eukaryotic origins were … the much more extensive taxonomic and genetic sampling, our study confirmed the affinity between Olpidium and the …

… Understanding how a fundamental mechanism of evolution allows microbes … sampled all at once from the same environment, called metagenomes. Why? Simon Roux, who led the research team and … the dice. There’s some evidence to support the idea. Study coauthor Stephen Nayfach, a JGI bioinformatics …

… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was … (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of the …

… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … Communication Manager Sarah Sharman recently interviewed study first author Avinash Sreedasyam, a HudsonAlpha senior … studies. We also looked at the cross-species comparable study, where plants were subjected to three nitrogen sources …