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Supercharging SIP in the Fungal Hyphosphere
… stable isotope probing helps ID novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial communities, with results published … National Laboratory was conducted under the auspices of the U.S. DOE under Contract DE-AC52-07NA27344. The work …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation     … in perspective, the genus Aspergillus has been evolving for 82 million years, making it nearly 30 times older than … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… Over the last year, we’ve been revisiting a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help … a chemical and biological engineer at the University of California Santa Barbara. So plants don’t break down without a …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and function. If a … registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species …
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Six join FICUS program in 2026
… to welcome six to the Facilities Integrating Collaborations for User Facilities (FICUS) program for fiscal year 2026, in … user facilities. Focus areas for these projects include biofuels, biomaterials and bioproducts; hydrobiogeochemistry; …
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River microbiomes from around the world: Kelly Wrighton
… Kelly Wrighton and her group at Colorado State University in Fort Collins have a massive undertaking: sequencing the …
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JGI announces 2025 Functional Genomics awardees
… Olufemi Isimikalu, Todd H. Oakley, BJ Philmus and Aaron M. Roshotte; [Below] Paul Scesa, Kathleen Scott, Tiffany … Benjamin Woolston. ] Each year, the JGI accepts proposals for state-of-the-art functional genomics research from scientists who …
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A Plantiful Future: Xiaohan Yang
… a renewable energy future? Can they help lock away more carbon? Xiaohan Yang, a scientist at Oak Ridge National Laboratory, believes they can. And, what’s more, that … using gene editing technology to conscientiously mix traits of different plant species will help us get there. …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome … Program was brimming with excitement and determination as they came onsite. From data carpentry to science … Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth …
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Expanding Virophage Diversity
… DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses with … in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the virophage marker gene MCP, they were able …
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2025 Progress Report
… JGI researchers demonstrate how their laboratory and data science efforts support users, advance foundational science and enable … to advance biotechnology. Mission  As a U.S. Department of Energy Office of Science user facility supported by the …
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Alabama A&M Interns Access An Abundance of Knowledge
… DOE RENEW initiative, undergraduate student Ti’Yanna Watson and graduate student LaMonika Dent worked with JGI … mentors Yi Zhai and John Vogel on researching the effects of Brachypodium distachyon plant root exudates on the plant … regulate the production of root exudates, which overall influences the health and composition of the root microbiome …
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