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Igor Grigoriev
… Dr. Grigoriev joined the JGI in 2003, following his postdoctoral training at UC … joint appointments as Fungal and Algal Program Head at the JGI, a Senior Scientist at Lawrence Berkeley National … and PhycoCosm portal. Dr. Grigoriev engaged thousands of researchers in genome projects and organized numerous …
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Pinning Down a Piece of Photosynthesis
… the structure and function of a cyanobacterial protein, researchers have new insights into how these ocean … carbon in changing conditions. The products of photosynthesis are easy to point out. Plants, algae and … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… On July 8, JGI’s DNA Synthesis Science group held a  JGI Engagement: … Accessing Functional Genomics Capabilities Webinar inviting researchers to submit white papers to the Community Science … DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the United States, and …
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DAS Tool for Genome Reconstruction from Metagenomes
… genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies Opportunity Program (ETOP) , researchers have developed and improved upon a tool that … Developing a scalable computational approach that provides researchers with the ability to recover and reconstruct …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… looking at how communities of these microalgae interact, researchers have found that polar algae rely on dissolved … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … are important for primary metabolism such as photosynthesis and gene regulation.  Mock and his team then linked …
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Accelerating Metagenomics Discoveries with Deep Learning
… assemble and interpret. The workshop aimed to showcase how researchers are utilizing deep learning to automatically … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … such as  Mash and  BBsketch , whose lead developer is JGI software developer Brian Bushnell, no alignment-free …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… yet much of it remains unknown. For more than a decade, researchers around the world have collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … over 80,000 biosynthetic gene clusters (BGCs) for synthesis of secondary metabolites, in line with the JGI’s …
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Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies
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Identifying the Microbial Cleanup Crew at a Superfund Site
… in New Mexico via leakage from a local dry-cleaner. Researchers  identified two bacteria,  Dehalococcoides … ethene. Applying genome sequencing and analysis, the researchers identified other bacteria and microbial … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Nikos Kyrpides
… and at Argonne National Laboratory. Dr. Kyrpides’ research focus on Microbiome Research with an emphasis on Microbiome Data Science. His … Thomson Reuters Highly Cited Researcher (Biology & Biochemistry) (2014-2023) Lawrence … Cyber-infrastructure for Advanced Marine Microbial Ecology Research and Analysis ( CAMERA ). …
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Tracking the Origins of Methane-Producing Microbes
… in the Proceedings of the National Academy of Sciences , researchers at Stanford University, the Chan Zuckerberg … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the … Yellowstone National Park’s Obsidian Pool hot spring. The researchers applied mini-metagenomics to these samples by …
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The Expanding Universe of Methane Metabolisms in Archaea
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly … known methanogens. With the help of this information, the researchers found evolutionary relationships between … the known number of Korarchaeota genomes, which helped the researchers position the lineage within the archaeal domain. …
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